Gene detail

Detail information of GWHGAAZE021773

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007034468.1	0	Leucine-rich repeat receptor-like protein kinase family protein isoform 1 [Theobroma cacao]
COG	YP_004775215.1	3E-62	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9LHP4\|RCH2_ARATH	0	Receptor-like protein kinase 2 (Precursor)
trEMBL	tr\|A0A061EK21\|A0A061EK21_THECC	0	Leucine-rich repeat receptor-like protein kinase family protein isoform 1 {ECO:0000313\|EMBL:EOY05395.1}
TAIR10	AT3G24240.1	0	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	61131463	61135524	-
GWHAAZE00000006	mRNA	61131463	61135524	-
GWHAAZE00000006	exon	61131463	61131959	-
GWHAAZE00000006	exon	61132586	61133075	-
GWHAAZE00000006	exon	61133152	61134267	-
GWHAAZE00000006	exon	61134366	61135200	-
GWHAAZE00000006	exon	61135301	61135524	-
GWHAAZE00000006	CDS	61135301	61135524	-
GWHAAZE00000006	CDS	61134366	61135200	-
GWHAAZE00000006	CDS	61133152	61134267	-
GWHAAZE00000006	CDS	61132586	61133075	-
GWHAAZE00000006	CDS	61131463	61131959	-

Transcript Sequence
>GWHTAAZE021797 ATGTCTTCTATGCTCACCTCGAGGCAACTGTCTTCCCATTTCCACCACCATTTTCTCTCTTCATTCTTCATTACCACCACCCTTCTTTTCCTTTTCACCGTCTTCATTCTCTTCACCCCCGGTGACGGCACCGGCGACGTCTCCGGCGAAGCCTCAACACTCCTATCATGGCTAAACACTTCCTCCTCTCACTCTGCCGTCTCCGGCGCAGGCGAAGCCTTGAAATTCAGTTGCCCGGCGAATTTCTCAGTTTTCCGGCACCTCGAGAAGCTGGTAATCTCCGACGCGAACCTCACCGGAACAGTCCCCGCCGATATCGGCGCGTGTACATCACTCACCCTCATTGATTTAAGCTCCAACAGCCTCGTGGGTCCCATTCCAACCTCCATTGGCAACCTCCAAAACCTTCAAACCCTAACACTCAACTCCAATCAACTCACCGGAAAAATCCCAATTGAAATCACCACCATCAAATCCCTCAAGAACCTCCTCCTCTTCGACAACCGTCTATCCGGCAACATTCCGGCGGAACTTGGCCTGTTAACTAACCTCGAAGTCCTCCGCGCCGGCGGCAATAAAGACCTCGCCGGAAAAATCCCCGACGAGATAGGAAACTGCGGTAAATTGGCCGTTTTAGGTCTCGCGGACACCAGAATCTCCGGTTCATTACCGGCCTCATTGGGTAAGCTCAAGAAACTCCAGACATTGTCTATATATACTGCAATGATCTCCGGCGAGATCCCGCCGGAGATTGGTAACTGCTCAGTTCTTGTCAACTTGTACTTGTATGAAAATAGTCTTTCGGGTTCAATCCCGAAAGAGCTTGGTAAATTGCAAATGCTTGAAAAATTGCTTCTTTGGCAGAATAATTTAGTTGGATCAATCCCAGAAGAAATTGGGAATTGTACTAAATTGAATATGATTGATCTTTCTTTGAATTCATTATCTGGCGCAATACCTTGGTCTTTTGGTGGCCTAATTGAGCTTCAAGAGCTTATGATAAGTAATAATAACGTATCGGGTTCGATTCCTTCCGTTCTTTCAAACGCTACTAATCTTTTAGAAGGTAGTGTACCTTCAAGCTTGGCTAATTGTATCAGCCTTCAAGCTATAGATTTGTCACACAATTCACTCACTGGTAGTGTACCACCAGGCTTGTTTCAGCTACAAAACCTCACTAAATTGCTGTTAATTTCGAATGATATTTCGGGTTCTTTACCGGAAGAGATCGGTGATTGTAGTTCGTTAGTGAGGCTGAGATTGGGGAACAACCGAATTGCTGGTCAAATCCCTAAAGAGATCGGGGGTTTGACGAGCTTAAACTTTCTTGATTTGTCGTCGAATCGCTTCTCTGGACTGGTACCCTATGAGATTGGGAGTTGTACAGAGTTGCAAATGGTTGATCTGAGTAACAATATGCTAGAAGGCCCCTTGCCTAATTCATTTTCATCTCTATCGGGTCTTCAAGTGTTTGATGTTTCAAGTAACCGGTTTGTGGGTCACATTCCGGCTAGTTTTGGCCGGCTTGTCTCGTTGAACAAGCTTGTTCTGAGCGAGAACTTGTTGTCCGGACCAATACCATCTTCCCTTGGGCTCTGTTCGAGTCTCCAGTTGCTTGACCTTAGCAGCAATGAGCTCACCGGTTACGTTCCAATGGAGTTATGCAAGATTGATGCCCTCGAAATTGCTCTTAACCTCAGCTGCAATGGGCTCACTGGTCCAATCCCGTCTCAAATATCGGCTCTCAACAAGCTTTCGATACTTGACTTGTCACACAATAGGCTAGAGGGGAGTTTGAGCCCTCTTTCTGGTCTCGACAATCTCATCTCTCTCAACATTTCGTACAATAACTTCACTGGTTATCTGCCCGACAACAAGCTCTTCCGTCAGTTAACCACCACGGACCTAGCCGGTAACCAAGGGCTGTGTTCTTTTGGCCGGGACTCATGTTTCTTGAACAATGTAAGAGGAACCAGTGGAAATGGATCCCACTTGAAGCGATCGAGGAGACTTAAACTAGCAATTGCTTTATTAATCACCTTGACCATAGCAATGGTGATCATGGGGGTAATTGCGGTAATTCGGGCACGAAGAACTATTAGAGCTGACGATGAGTCCGAGATAGGGGATTCTTGGCCTTGGCAATTCACCCCATTCCAAAAGCTAAATTTCTCGGATATGGACAACGGCGAGGTAATCGCGGTGAAGAAGCTTTGGCCGGCAATGGCTGCATCCAACACTTGCGACAATGAAAAATGTACTGTTCGTGATTCTTTCTCTGCTGAGGTGAAAACACTCGGCTCGATTCGGCATAAGAACATCGTTAGGTTCTTGGGTTGTTGTTGGAATCGAAGTACAAGGTTGCTTATGTACGATTATATGCCAAATGGGAGCTTGGGCAGTCTTTTACATGAGAGGAATGGGAACCCTTTGGAGTGGGAATTGAGGTACCAAATTTTGCTAGGAGCAGCACAAGGGATTGCATATCTGCACCATGATTGTGTTCCTCCTATTGTTCATAGGGATATTAAGGCTAATAATATCCTTATTGGCCTTGAATTTGAACCTTACATTGCGGATTTTGGGCTCGCCAAGCTAGTCGATGATGGTGATTTTGCTCGGTCCTCGAATACAATAGCGGGTTCCTATGGATATATTGCTCCAGAATACGGCTACATGATGAAGATTACAGAGAAGAGCGATGTTTATAGCTACGGTGTAGTAGTACTCGAAGTGTTGACCGGTAAGCAACCCATTGACCCCACAATACCAGACGGGCTCCATGTGGTGGACTGGGTTAGGCAAAAGAGGGGAGGCATTGAAGTACTCGACCCGAGCCTACGGTCCCGCCCTGAATCGGATACCGAGGAAATGTTGCAAGCCCTCGGCATTTCTTTATTATGTGTAAATGCCTCACCGGAAGAACGGCCAACCATGAAAGATGTAGCGGCAATGCTCAAAGAAATCAAACATGACAGGGAAGAGTATGCTAAGGTTGATGTCCTCCTCAAGGGCTCTCCGGCAAGTGCCCCTGCCGGAGCTCCGACAACCTCCTCGTCAGCAATAAGGAACTTGTACAACAATAATGGGAACAACAGAAGCTTCTCTGCATCCTCATTGATCTATTCATCTTCCTCTAGTGCGAGAATGGGATTCAAGTGA

Network for GWHGAAZE021773

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	415	474	1.10E-06
PF13855.7	LRR_8	487	546	3.10E-07
PF07714.18	PK_Tyr_Ser-Thr	752	985	1.00E-38

Protein Sequence

>GWHPAAZE021786
MSSMLTSRQLSSHFHHHFLSSFFITTTLLFLFTVFILFTPGDGTGDVSGEASTLLSWLNTSSSHSAVSGAGEALKFSCPANFSVFRHLEKLVISDANLTGTVPADIGACTSLTLIDLSSNSLVGPIPTSIGNLQNLQTLTLNSNQLTGKIPIEITTIKSLKNLLLFDNRLSGNIPAELGLLTNLEVLRAGGNKDLAGKIPDEIGNCGKLAVLGLADTRISGSLPASLGKLKKLQTLSIYTAMISGEIPPEIGNCSVLVNLYLYENSLSGSIPKELGKLQMLEKLLLWQNNLVGSIPEEIGNCTKLNMIDLSLNSLSGAIPWSFGGLIELQELMISNNNVSGSIPSVLSNATNLLEGSVPSSLANCISLQAIDLSHNSLTGSVPPGLFQLQNLTKLLLISNDISGSLPEEIGDCSSLVRLRLGNNRIAGQIPKEIGGLTSLNFLDLSSNRFSGLVPYEIGSCTELQMVDLSNNMLEGPLPNSFSSLSGLQVFDVSSNRFVGHIPASFGRLVSLNKLVLSENLLSGPIPSSLGLCSSLQLLDLSSNELTGYVPMELCKIDALEIALNLSCNGLTGPIPSQISALNKLSILDLSHNRLEGSLSPLSGLDNLISLNISYNNFTGYLPDNKLFRQLTTTDLAGNQGLCSFGRDSCFLNNVRGTSGNGSHLKRSRRLKLAIALLITLTIAMVIMGVIAVIRARRTIRADDESEIGDSWPWQFTPFQKLNFSDMDNGEVIAVKKLWPAMAASNTCDNEKCTVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRSTRLLMYDYMPNGSLGSLLHERNGNPLEWELRYQILLGAAQGIAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFARSSNTIAGSYGYIAPEYGYMMKITEKSDVYSYGVVVLEVLTGKQPIDPTIPDGLHVVDWVRQKRGGIEVLDPSLRSRPESDTEEMLQALGISLLCVNASPEERPTMKDVAAMLKEIKHDREEYAKVDVLLKGSPASAPAGAPTTSSSAIRNLYNNNGNNRSFSASSLIYSSSSSARMGFK

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.684
	SRR3591706	second leaf	0.484
	SRR3591707	mature leaf	0.011
	SRR3591708	Shoot apex	3.083
	SRR3591709	Stem	1.228
	SRR3591710	White floral bud	0.097
	SRR3591711	White flower	0.096
	SRR3591712	Green floral bud	0.384
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.306
	SRR8316896	Juvenile bud stage	0.195
	SRR8316897	Juvenile bud stage	0.200
	SRR8316894	Third green stage	0.254
	SRR8316900	Third green stage	0.283
	SRR8316901	Third green stage	0.436
	SRR8316898	Complete white stage	0.002
	SRR8316899	Complete white stage	0.293
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.028
SRP132670	SRR6706286	Control	0.085
	SRR6706287	Light intensity 50%	0.240
	SRR6706288	Light intensity 20%	0.178
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.347
	CNS0095593	Slightly white alabastrum(diploid) 2	0.633
	CNS0095594	Slightly white alabastrum(diploid) 3	0.305
	CNS0095595	Whole white alabastrum(diploid) 2	0.170
	CNS0095596	Whole white alabastrum(diploid) 3	0.043
	CNS0095597	Whole white alabastrum(diploid) 4	0.101
	CNS0095598	Silvery flower (diploied) 1	0.080
	CNS0095599	Silvery flower (diploied) 2	0.129
	CNS0095600	Silvery flower (diploied) 3	0.186
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.097
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.004
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.613
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.260
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.666
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.131
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.063
	CNS0095610	Silvery flower (tetraploid) 1	0.280
	CNS0095611	Silvery flower (tetraploid) 2	0.255
	CNS0095612	Silvery flower (tetraploid) 3	0.185
	CNS0095613	Golden flower (tetraploid) 1	0.046
	CNS0095614	Golden flower (tetraploid) 2	0.002
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.002
	CRR073298	Stem 2	1.204
	CRR073299	Stem 3	1.011
	CRR073300	Leaf 1	1.155
	CRR073301	Leaf 2	1.347
	CRR073302	Leaf 3	0.655
	CRR073303	Juvenile bud 1	0.259
	CRR073304	Juvenile bud 2	0.100
	CRR073305	Juvenile bud 3	0.353
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.162
	CRR073308	Third green 3	0.038
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.573
	CRR073319	Tawny withering 2	1.027
	CRR073320	Tawny withering 3	1.753