Gene detail

Detail information of GWHGAAZE021734

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010999308.1	6.30839E-24	PREDICTED: pto-interacting protein 1 isoform X2 [Populus euphratica]
Swissprot	tr\|Q41328\|PTI1_SOLLC	1E-24	Pto-interacting protein 1
trEMBL	tr\|K3XJD2\|K3XJD2_SETIT	2E-26	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si002005m}
TAIR10	AT3G17410.1	1E-20	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	60542404	60545353	-
GWHAAZE00000006	mRNA	60542404	60545353	-
GWHAAZE00000006	exon	60545216	60545353	-
GWHAAZE00000006	exon	60544141	60544175	-
GWHAAZE00000006	exon	60543918	60544039	-
GWHAAZE00000006	exon	60543344	60543450	-
GWHAAZE00000006	exon	60543026	60543132	-
GWHAAZE00000006	exon	60542404	60542846	-
GWHAAZE00000006	five_prime_UTR	60545319	60545353	-
GWHAAZE00000006	CDS	60545216	60545318	-
GWHAAZE00000006	CDS	60544141	60544175	-
GWHAAZE00000006	CDS	60543918	60544039	-
GWHAAZE00000006	CDS	60543344	60543450	-
GWHAAZE00000006	CDS	60543026	60543132	-
GWHAAZE00000006	CDS	60542781	60542846	-
GWHAAZE00000006	three_prime_UTR	60542404	60542780	-

Transcript Sequence
>GWHTAAZE021758 ATTTTATTAGGTTTCGATGGCATCAAGACTTAAACATGATAACGTGGTTGAGCTACTTGGTTATTCTGTGGATGGTGACCTCACGTGTCCTTGCCTATGAGTATGCTTCAAATGGATCTCTTTATGACATTCTTCACGGGCCGGAAGGTGGGAAAGACAAGCAACCAGGTCCAGTCCTCCAATGTTTTACTTTTAAGGATGATGTTGCAAAGATAGCGGATATGGACTTGTCGAACCAAGCCCCTAACATGACAAGGCATCTTTCTTCCACTTATGCTGGTTATTTTCCTCCTGAGTGGCCTCAACCGCCGTCTAAGTTTGATTTTGATGTTAGAGACTTGAATCCCTGTTGGCCCTCTGCCGTCGAGCTAGATGGCATACAATTACTGAAAATACTGAAAATGGGTGTGGATTGTACTAGGCAACTCCAAAACTCAGCGATGATAACGATGAAGCAGTGTATTGACCCTAAATTGAATGGAGAATTCCATCCCAAACAAGCTGCAAAGATGGCTGCTGTTGCAGCTTTGTGTACACAATATGAAGCGAATACCGGCCGACCATGGGGATTGTAGTTAAAGCACTCCAGCCTTTGCTGAATGCTTTACCTGGACCCAGACGTGAGGCACCACACTCGTAAATCCGTGCCTTCATTATGATTTAATGTGATACCCACTCTTCAGTCATCCAAAAGTTGGTGCATTTTTCTTTCTTCTTTTTGACAATGAGTAGAATCATTCTGAAGATCAAGTGGCCCCGGCTACATTGCTGTCCTATGCATTTAGTTTGTATTAAAGTTCTGATCTGTGTACCAGCTGGTACCAGTTCATTGTATTCTTCAGTATATATGCTTGTATCGATTCTTGTATTGGGTGCCCATAACATAGCTTAACATGTAGAGACAAGCTGTGAGATTGCAATATTTAAAATGCTATACTTAAAATTCATACAA

Network for GWHGAAZE021734

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13436	PTI1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.290
	SRR3591706	second leaf	0.331
	SRR3591707	mature leaf	0.422
	SRR3591708	Shoot apex	0.426
	SRR3591709	Stem	0.878
	SRR3591710	White floral bud	0.323
	SRR3591711	White flower	0.829
	SRR3591712	Green floral bud	0.456
	SRR3591713	Yellow flower	0.393
SRP173429	SRR8316895	Juvenile bud stage	0.108
	SRR8316896	Juvenile bud stage	0.022
	SRR8316897	Juvenile bud stage	0.071
	SRR8316894	Third green stage	0.018
	SRR8316900	Third green stage	0.071
	SRR8316901	Third green stage	0.087
	SRR8316898	Complete white stage	0.121
	SRR8316899	Complete white stage	0.007
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.101
	SRR8316904	Silver flowering stage	0.017
	SRR8316905	Silver flowering stage	0.020
	SRR8316906	Gold flowering stage	0.041
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.108
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.012
	SRR6706288	Light intensity 20%	0.003
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.286
	CNS0095593	Slightly white alabastrum(diploid) 2	0.190
	CNS0095594	Slightly white alabastrum(diploid) 3	0.217
	CNS0095595	Whole white alabastrum(diploid) 2	0.139
	CNS0095596	Whole white alabastrum(diploid) 3	0.066
	CNS0095597	Whole white alabastrum(diploid) 4	0.037
	CNS0095598	Silvery flower (diploied) 1	0.096
	CNS0095599	Silvery flower (diploied) 2	0.038
	CNS0095600	Silvery flower (diploied) 3	0.041
	CNS0095601	Golden flower (diploid) 1	0.096
	CNS0095602	Golden flower (diploid) 2	0.027
	CNS0095603	Golden flower (diploid) 3	0.042
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.059
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.152
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.235
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.414
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.202
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.369
	CNS0095610	Silvery flower (tetraploid) 1	0.328
	CNS0095611	Silvery flower (tetraploid) 2	0.308
	CNS0095612	Silvery flower (tetraploid) 3	0.177
	CNS0095613	Golden flower (tetraploid) 1	0.708
	CNS0095614	Golden flower (tetraploid) 2	0.508
	CNS0095615	Golden flower (tetraploid) 3	0.154
CRA001975	CRR073297	Stem 1	0.057
	CRR073298	Stem 2	0.013
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.037
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.024
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.054
	CRR073310	Second white 2	0.026
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.110
	CRR073316	Gold flowering 2	0.025
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.068
	CRR073319	Tawny withering 2	0.154
	CRR073320	Tawny withering 3	0.004