Gene detail

Detail information of GWHGAAZE021710

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009626058.1	PREDICTED: probable linoleate 9S-lipoxygenase 5 isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q43191\|LOX15_SOLTU	Probable linoleate 9S-lipoxygenase 5
trEMBL	tr\|C1PGH4\|C1PGH4_9ERIC	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT3G22400.1	PLAT/LH2 domain-containing lipoxygenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	60023864	60031772	+
GWHAAZE00000006	mRNA	60023864	60031772	+
GWHAAZE00000006	exon	60023864	60024119	+
GWHAAZE00000006	exon	60025452	60025738	+
GWHAAZE00000006	exon	60026793	60027039	+
GWHAAZE00000006	exon	60027661	60027999	+
GWHAAZE00000006	exon	60028240	60028325	+
GWHAAZE00000006	exon	60028527	60028634	+
GWHAAZE00000006	exon	60028920	60029224	+
GWHAAZE00000006	exon	60029807	60030070	+
GWHAAZE00000006	exon	60031001	60031772	+
GWHAAZE00000006	CDS	60023864	60024119	+
GWHAAZE00000006	CDS	60025452	60025738	+
GWHAAZE00000006	CDS	60026793	60027039	+
GWHAAZE00000006	CDS	60027661	60027999	+
GWHAAZE00000006	CDS	60028240	60028325	+
GWHAAZE00000006	CDS	60028527	60028634	+
GWHAAZE00000006	CDS	60028920	60029224	+
GWHAAZE00000006	CDS	60029807	60030070	+
GWHAAZE00000006	CDS	60031001	60031772	+

Transcript Sequence
>GWHTAAZE021734 ATGGGGCACCCGCTGTGTTCTTCGGAGGCTTTGAACAAGATACTTGAGACTGTATGTGGGAGTGGCAAAAGCAAGAGCATAGAAGAAAAGAAACTTAACGAAAAAAAGAGAAAGAAGATCAAAGGGCGCGTGGTGTTGATGAAGAAGAATGTTTTGGACACCACTGATCCTGGGGCAACTCTTCTTGATTGGGTTTACGAGTTAGTCGGCAAAGGCGTCTCCATACAGCTCATTAGTTCTGTTCATTGTGACCCAGAAAATGGATTGAAAGGGAAGCTGGGAAAAGCATCACCAATCGAAAAATGGGCAAGTATACTCCGGGTTACAGCGTCCGAGGTGGAATTCAACATGTCATTTGAGTGGGAGGACTCCATTGGTGTACCTGGTGCTTTCATCATCAAAAACAATCACAGAAGTCAGTTCTACCTCAAGACAGTCACCCTAGAAGATGTCCCAAATCATGGGAAGGTCCATTTCGTTTGCAATTCTTGGGTTTACCCGGCTCACCGTTATAAATATGATCGTGTGTTCTTCGCTAACAAGACCTACCTACCACATCAAACACCCGAAGCGCTGCGACCATACAGAGAAGAAGAACTTATTAATCTTCGTGGAAGCAAGTCTGACTCGGGCATGCTCAAGGAGTGGGACCGGGTTTATGAGTATGCCTACTACAATGATTTGGGGAGTCCAGAAAAGGGACCCGATTATGATCGACCTGTGCTTGGTGGATCTAAGGAATACCCCTACCCGCGTAGAGGAAAAACGGGCCGGGCTCCAAATAAGAAAGATCCCAAAACCGAAAGCAGATTACCACTTCTAAGTTTGGACATTTATGTACCTAGAGATGAGCGTTTCAGTCGGGTGAAGTTTTCTGATTTCCTTGCCTATGCTGCAAAATCCCTACTCCAGATACTGGTGGCAGGGGTCACGTCTGTGTTAGATAAAACTCCGACCGAGTTCGACAAATTCGAAGACATACTAAAACTTTACAATGGTGAGACTGATCTACCACAAGGGGTCACACTTGCTAAACTCCGGGATTGTGTCCCTTGGGAAATGCTCAAAGAAATCATTCGATCTGATGGTGAGCGTCTCCACAATTTCCCCATGCCCGATGTAATCAAAGTGGATGAGTCTGCATGGAGGACTGATGAAGAGTTTGCACGCGAAATGCTAGCTGGAGTGAACCCTGTCTCAATCACTCGCCTCAAGGAGTTTCCACCTAAGAGCAATTTAGATCCGGAAGTGTATGGAAATCAAACAAGCTCAATAACAAGGGAGTGCATTGAGAAGAACATGAATGGGCTATCTGTGGATGAGGCAATTGAGTGTAATAAGATGTACATCTTAGATCATCATGATGCACTGATGCCATACCTGGGACGGATTAACACAACGGGCTCGAAGATATATGCCAGCCGAACTCTACTCATACTCCAAGATGATGGAACCTTGAAGCCACTGGCGATTGAACTGAGCTTACCACACCCACAAGGCGAAAAACATGGTGCTACTAGCCATGTCTTTACTCCGGCAGAAAAGGGCATCGAAGGCACTGTGTGGCAGCTGGCAAAAGCTTATGCTGCTGTTAATGATTCTGGTTATCATCAGCTCATTAGCCACTGGTTAAATACTCATGCAGTGATAGAGCCATTTGTGATTGCAACAAATAGACAGTTGAGTGTGCTTCATCCAATATACAAGCTTCTGCATCCCCATTACCGCGATACAATGAATATAAATGCGTTGGCTAGGCAGATCCTCATCAATGCAGGCGGGGTACTAGAGATGACTGTCTTCCCGGCTAAATTTTCAATGGAAATGTCTTCTATTATATATAAGGATTGGGTTTTCCCTGAGCAATCACTTCCAGCTGACCTGCTAAAGAGAGGAGTGGCAGTTGAAGACTCGAGCCAGCCCAATGGTCTAAGACTTCTCATCGAGGACTACCCATATGCCGTTGACGGCCTCGAAATATGGTCAGCAATTGAAACTTGGGTACATGACTATTGCTGCTTCTATTACCCAACTGACGACTCGATCCAAGGTGACTCAGAGCTCCAATCATGGTGGACGGAGCTCCGCGAGAAGGGCCATGGTGACAAGAAAGATGAGCCATGGTGGCCTAAAATGCAGACACTAGGGGAACTTACGCAAACTTGCACCATTATCATATGGGTCGCTTCTGCTCTCCATGCAGCAGTGAATTTCGGGCAATACTCTTACGCAGGCTACCTCCCAAACCGCCCGACTGTGAGCCGCCGGTTCATGCCCGAGCGAGGCACACAAGAGTATGCCGAGCTCGGGACGGACCCTGACTTGGCCTTCCTAAAAACAATCACAGCCCAGTTTCAAACACTCCTTGGTGTGTCTTTAATCGAGGTTTTGTCAAGGCATACTTCGGATGAGATTTATCTTGGGCAGAGAGACACCCTTGAGTGGACTTCGGATGGTCAAGCGCTTGAGGCATTTCAGAGGTTCGGCACAAAGCTAAAGGAGATTGAAAAGAGAATAGAGGAGAGGAATAATGATGAAAGATTGAAGAACAGAGTGGGCCCAGTGAAGCTGCCTTACACTTTGCTCTATCCTAACACCTCAGCTGACAACCGTAAAGAAACTGGACTTACTGGCAAGGGAATTCCCAACAGTGTCTCGATATAA

Network for GWHGAAZE021710

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01477.24	PLAT	80	178	1.30E-16
PF00305.20	Lipoxygenase	192	864	0

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15718	LOX1_5	Linoleic acid metabolism	map00591

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.317
	SRR3591706	second leaf	15.007
	SRR3591707	mature leaf	42.499
	SRR3591708	Shoot apex	12.050
	SRR3591709	Stem	58.435
	SRR3591710	White floral bud	22.431
	SRR3591711	White flower	37.068
	SRR3591712	Green floral bud	14.628
	SRR3591713	Yellow flower	12.456
SRP173429	SRR8316895	Juvenile bud stage	14.020
	SRR8316896	Juvenile bud stage	18.387
	SRR8316897	Juvenile bud stage	7.026
	SRR8316894	Third green stage	6.646
	SRR8316900	Third green stage	17.239
	SRR8316901	Third green stage	19.159
	SRR8316898	Complete white stage	26.083
	SRR8316899	Complete white stage	44.905
	SRR8316903	Complete white stage	46.028
	SRR8316902	Silver flowering stage	20.032
	SRR8316904	Silver flowering stage	29.127
	SRR8316905	Silver flowering stage	15.673
	SRR8316906	Gold flowering stage	35.524
	SRR8316907	Gold flowering stage	39.287
	SRR8316908	Gold flowering stage	39.495
SRP132670	SRR6706286	Control	45.938
	SRR6706287	Light intensity 50%	39.415
	SRR6706288	Light intensity 20%	37.920
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.054
	CNS0095593	Slightly white alabastrum(diploid) 2	14.599
	CNS0095594	Slightly white alabastrum(diploid) 3	14.598
	CNS0095595	Whole white alabastrum(diploid) 2	13.229
	CNS0095596	Whole white alabastrum(diploid) 3	7.640
	CNS0095597	Whole white alabastrum(diploid) 4	12.258
	CNS0095598	Silvery flower (diploied) 1	49.431
	CNS0095599	Silvery flower (diploied) 2	35.220
	CNS0095600	Silvery flower (diploied) 3	33.520
	CNS0095601	Golden flower (diploid) 1	49.681
	CNS0095602	Golden flower (diploid) 2	44.333
	CNS0095603	Golden flower (diploid) 3	40.452
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.892
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.926
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.184
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.561
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.006
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.527
	CNS0095610	Silvery flower (tetraploid) 1	27.622
	CNS0095611	Silvery flower (tetraploid) 2	34.413
	CNS0095612	Silvery flower (tetraploid) 3	131.527
	CNS0095613	Golden flower (tetraploid) 1	31.673
	CNS0095614	Golden flower (tetraploid) 2	28.627
	CNS0095615	Golden flower (tetraploid) 3	39.351
CRA001975	CRR073297	Stem 1	31.513
	CRR073298	Stem 2	27.590
	CRR073299	Stem 3	28.699
	CRR073300	Leaf 1	29.440
	CRR073301	Leaf 2	37.365
	CRR073302	Leaf 3	28.360
	CRR073303	Juvenile bud 1	29.685
	CRR073304	Juvenile bud 2	26.973
	CRR073305	Juvenile bud 3	47.010
	CRR073306	Third green 1	46.341
	CRR073307	Third green 2	48.747
	CRR073308	Third green 3	55.963
	CRR073309	Second white 1	52.071
	CRR073310	Second white 2	51.713
	CRR073311	Second white 3	47.281
	CRR073312	Silver flowering 1	28.504
	CRR073313	Silver flowering 2	25.339
	CRR073314	Silver flowering 3	27.566
	CRR073315	Gold flowering 1	68.135
	CRR073316	Gold flowering 2	97.416
	CRR073317	Gold flowering 3	87.314
	CRR073318	Tawny withering 1	54.019
	CRR073319	Tawny withering 2	59.521
	CRR073320	Tawny withering 3	45.121