Detail information of GWHGAAZE021628


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006354974.11.0402E-122PREDICTED: receptor-like protein kinase FERONIA-like [Solanum tuberosum]
COGYP_001958461.13E-17hypothetical protein Aasi_1443
Swissprottr|P27450|CX32_ARATH3E-101Probable serine/threonine-protein kinase Cx32, chloroplastic (Precursor)
trEMBLtr|M1APN7|M1APN7_SOLTU4E-123Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400027429}
TAIR10AT1G76360.13E-90Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene5850098658507612-
GWHAAZE00000006mRNA5850098658507612-
GWHAAZE00000006exon5850735358507612-
GWHAAZE00000006exon5850652658507019-
GWHAAZE00000006exon5850564958505980-
GWHAAZE00000006exon5850487058504950-
GWHAAZE00000006exon5850394358504081-
GWHAAZE00000006exon5850370958503842-
GWHAAZE00000006exon5850351658503630-
GWHAAZE00000006exon5850098658501329-
GWHAAZE00000006CDS5850735358507612-
GWHAAZE00000006CDS5850652658507019-
GWHAAZE00000006CDS5850564958505980-
GWHAAZE00000006CDS5850487058504950-
GWHAAZE00000006CDS5850394358504081-
GWHAAZE00000006CDS5850370958503842-
GWHAAZE00000006CDS5850351658503630-
GWHAAZE00000006CDS5850098658501329-
Transcript Sequence

Network for GWHGAAZE021628

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07714.18PK_Tyr_Ser-Thr30922.80E-08
PF07714.18PK_Tyr_Ser-Thr982002.80E-07
PF00069.26Pkinase3876129.90E-34
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005524molecular_functionATP binding
GO:0004672molecular_functionprotein kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.983
SRR3591706second leaf1.701
SRR3591707mature leaf3.195
SRR3591708Shoot apex3.245
SRR3591709Stem5.784
SRR3591710White floral bud1.985
SRR3591711White flower3.692
SRR3591712Green floral bud1.730
SRR3591713Yellow flower1.964
SRP173429 SRR8316895Juvenile bud stage 25.997
SRR8316896Juvenile bud stage 33.100
SRR8316897Juvenile bud stage 6.899
SRR8316894Third green stage 4.564
SRR8316900Third green stage 7.525
SRR8316901Third green stage 14.287
SRR8316898Complete white stage 2.706
SRR8316899Complete white stage 26.746
SRR8316903Complete white stage 4.721
SRR8316902Silver flowering stage7.941
SRR8316904Silver flowering stage8.158
SRR8316905Silver flowering stage4.021
SRR8316906Gold flowering stage 18.349
SRR8316907Gold flowering stage 15.161
SRR8316908Gold flowering stage 8.563
SRP132670SRR6706286Control15.535
SRR6706287Light intensity 50%16.179
SRR6706288Light intensity 20%15.717
CNP0000432CNS0095592Slightly white alabastrum(diploid) 139.525
CNS0095593Slightly white alabastrum(diploid) 239.004
CNS0095594Slightly white alabastrum(diploid) 338.009
CNS0095595Whole white alabastrum(diploid) 227.191
CNS0095596Whole white alabastrum(diploid) 35.962
CNS0095597Whole white alabastrum(diploid) 417.509
CNS0095598Silvery flower (diploied) 132.056
CNS0095599Silvery flower (diploied) 234.469
CNS0095600Silvery flower (diploied) 316.652
CNS0095601Golden flower (diploid) 148.277
CNS0095602Golden flower (diploid) 239.405
CNS0095603Golden flower (diploid) 336.806
CNS0095604Slightly white alabastrum(tetraploid) 10.996
CNS0095605Slightly white alabastrum(tetraploid) 21.080
CNS0095606Slightly white alabastrum(tetraploid) 32.409
CNS0095607Whole white alabastrum(tetraploid) 11.069
CNS0095608Whole white alabastrum(tetraploid) 20.484
CNS0095609Whole white alabastrum(tetraploid) 31.325
CNS0095610Silvery flower (tetraploid) 11.688
CNS0095611Silvery flower (tetraploid) 21.553
CNS0095612Silvery flower (tetraploid) 31.081
CNS0095613Golden flower (tetraploid) 11.486
CNS0095614Golden flower (tetraploid) 22.008
CNS0095615Golden flower (tetraploid) 30.904
CRA001975CRR073297Stem 119.354
CRR073298Stem 214.393
CRR073299Stem 39.792
CRR073300Leaf 117.179
CRR073301Leaf 217.894
CRR073302Leaf 312.230
CRR073303Juvenile bud 110.520
CRR073304Juvenile bud 24.431
CRR073305Juvenile bud 38.995
CRR073306Third green 18.012
CRR073307Third green 24.472
CRR073308Third green 37.087
CRR073309Second white 13.892
CRR073310Second white 24.213
CRR073311Second white 34.300
CRR073312Silver flowering 18.665
CRR073313Silver flowering 27.439
CRR073314Silver flowering 37.681
CRR073315Gold flowering 111.132
CRR073316Gold flowering 229.900
CRR073317Gold flowering 39.016
CRR073318Tawny withering 131.532
CRR073319Tawny withering 260.123
CRR073320Tawny withering 333.258