Detail information of GWHGAAZE021560


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010107515.18.9551E-113Isocitrate dehydrogenase [NAD] catalytic subunit 5 [Morus notabilis]
COGYP_003956501.13E-68isocitrate dehydrogenase
Swissprottr|Q945K7|IDH5_ARATH2E-107Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial (Precursor)
trEMBLtr|W9SLH0|W9SLH0_9ROSA3E-113Isocitrate dehydrogenase [NAD] subunit, mitochondrial {ECO:0000256|RuleBase:RU361266}
TAIR10AT5G03290.16E-87isocitrate dehydrogenase V

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene5678945856794278-
GWHAAZE00000006mRNA5678945856794278-
GWHAAZE00000006exon5679419856794278-
GWHAAZE00000006exon5679404756794121-
GWHAAZE00000006exon5679371756793826-
GWHAAZE00000006exon5679352356793595-
GWHAAZE00000006exon5678945856789649-
GWHAAZE00000006CDS5679419856794278-
GWHAAZE00000006CDS5679404756794121-
GWHAAZE00000006CDS5679371756793826-
GWHAAZE00000006CDS5679352356793595-
GWHAAZE00000006CDS5678945856789649-
Transcript Sequence

Network for GWHGAAZE021560

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00180.21Iso_dh71721.20E-62
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00030IDH3 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cyclemap00020

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0000287molecular_functionmagnesium ion binding
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287molecular_functionNAD binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.781
SRR3591706second leaf0.805
SRR3591707mature leaf0.618
SRR3591708Shoot apex1.304
SRR3591709Stem2.958
SRR3591710White floral bud7.414
SRR3591711White flower4.511
SRR3591712Green floral bud8.724
SRR3591713Yellow flower5.303
SRP173429 SRR8316895Juvenile bud stage 0.137
SRR8316896Juvenile bud stage 0.374
SRR8316897Juvenile bud stage 0.080
SRR8316894Third green stage 0.016
SRR8316900Third green stage 0.553
SRR8316901Third green stage 0.979
SRR8316898Complete white stage 0.533
SRR8316899Complete white stage 0.676
SRR8316903Complete white stage 0.039
SRR8316902Silver flowering stage0.724
SRR8316904Silver flowering stage0.696
SRR8316905Silver flowering stage0.159
SRR8316906Gold flowering stage 0.722
SRR8316907Gold flowering stage 0.769
SRR8316908Gold flowering stage 1.261
SRP132670SRR6706286Control0.321
SRR6706287Light intensity 50%0.196
SRR6706288Light intensity 20%0.279
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.662
CNS0095593Slightly white alabastrum(diploid) 21.214
CNS0095594Slightly white alabastrum(diploid) 31.228
CNS0095595Whole white alabastrum(diploid) 21.199
CNS0095596Whole white alabastrum(diploid) 31.685
CNS0095597Whole white alabastrum(diploid) 41.901
CNS0095598Silvery flower (diploied) 10.456
CNS0095599Silvery flower (diploied) 20.507
CNS0095600Silvery flower (diploied) 31.349
CNS0095601Golden flower (diploid) 10.303
CNS0095602Golden flower (diploid) 20.882
CNS0095603Golden flower (diploid) 30.882
CNS0095604Slightly white alabastrum(tetraploid) 10.825
CNS0095605Slightly white alabastrum(tetraploid) 21.170
CNS0095606Slightly white alabastrum(tetraploid) 30.736
CNS0095607Whole white alabastrum(tetraploid) 11.206
CNS0095608Whole white alabastrum(tetraploid) 21.135
CNS0095609Whole white alabastrum(tetraploid) 30.813
CNS0095610Silvery flower (tetraploid) 11.646
CNS0095611Silvery flower (tetraploid) 20.759
CNS0095612Silvery flower (tetraploid) 30.582
CNS0095613Golden flower (tetraploid) 10.672
CNS0095614Golden flower (tetraploid) 20.727
CNS0095615Golden flower (tetraploid) 30.632
CRA001975CRR073297Stem 11.096
CRR073298Stem 20.854
CRR073299Stem 30.492
CRR073300Leaf 12.207
CRR073301Leaf 21.573
CRR073302Leaf 30.815
CRR073303Juvenile bud 13.451
CRR073304Juvenile bud 22.711
CRR073305Juvenile bud 32.027
CRR073306Third green 12.783
CRR073307Third green 22.720
CRR073308Third green 31.628
CRR073309Second white 13.461
CRR073310Second white 22.639
CRR073311Second white 31.790
CRR073312Silver flowering 11.817
CRR073313Silver flowering 23.887
CRR073314Silver flowering 31.850
CRR073315Gold flowering 11.144
CRR073316Gold flowering 20.781
CRR073317Gold flowering 31.091
CRR073318Tawny withering 11.224
CRR073319Tawny withering 21.009
CRR073320Tawny withering 32.318