Gene detail

Detail information of GWHGAAZE021410

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG14815.1	4.80006E-84	Alkaline ceramidase 3 [Gossypium arboreum]
trEMBL	tr\|U5FNC0\|U5FNC0_POPTR	2E-83	Uncharacterized protein {ECO:0000313\|EMBL:ERP50867.1}
TAIR10	AT4G22330.1	1E-45	Alkaline phytoceramidase (aPHC)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	52211330	52216000	+
GWHAAZE00000006	mRNA	52211330	52216000	+
GWHAAZE00000006	exon	52211330	52211476	+
GWHAAZE00000006	exon	52211554	52211583	+
GWHAAZE00000006	exon	52212340	52212436	+
GWHAAZE00000006	exon	52215488	52215602	+
GWHAAZE00000006	exon	52215694	52216000	+
GWHAAZE00000006	CDS	52211330	52211476	+
GWHAAZE00000006	CDS	52211554	52211583	+
GWHAAZE00000006	CDS	52212340	52212436	+
GWHAAZE00000006	CDS	52215488	52215602	+
GWHAAZE00000006	CDS	52215694	52216000	+

Transcript Sequence
>GWHTAAZE021434 ATGGAAGATGGAATATCAAGCTTTTGGGGTCCTGTGACGTCCACCACTGAATGGTGCGAGAAGAACTATGTCTACTCATCATACATTGCAGAGTTCTTCAACACTGTATCAAATATCCCGGGCATTCTTTTGGCACTTATTGGTCTTCATGCTATTCCATGCCACACTACAGCGCTTTTTGACTGGCCAAACCATTCTTCCTTAGGTCTTAATCTGAGCTATGGGCTGACCACAGTGTGGCCCATGTTAGTTCGGCCTGGGCCAAAGAACACTTGCAGCAGCAAGGCGATGAAACGCCAATGGTATGGGAAATGCTTCTCTATATCTATATACTCTACTCTCCGGACTGGCATTACCGAAGTACAATGCCAACATTTTATTCCTCTACGAATGTACAAGTACTACATTTTCACCGAAGACCGTGCCGCCAAACGGCTTGCAAAGTTGTACTTGGTCACCTTGTTGCTAGGGAGTTTATGTTGGCTTTGTGACCGTCTCTTTTGCAAGAATATTTCTCGGTGGTACTTCAATCCACAGGGCCATGCTTTGTGGCATGTTTTTATGGGTTTCAATTCGTATTTTGCAAATACATTCTTGATGTTCTGCCGGGCCCAGCAACGTGGTTGGGGTCCGAAAGTGGTGCACTTTTTGGGACTTTTCCCTTATGTGAAGATTCAAAAGCCAAAGGATCAATGA

Network for GWHGAAZE021410

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05875.13	Ceramidase	8	51	1.00E-16
PF05875.13	Ceramidase	138	212	1.70E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04711	ACER3, YDC1	Metabolic pathways	map01100
K04711	ACER3, YDC1	Sphingolipid metabolism	map00600

Gene Ontology

GO term	Ontology	Name
GO:0006672	biological_process	ceramide metabolic process
GO:0016021	cellular_component	integral component of membrane
GO:0016811	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.995
	SRR3591706	second leaf	11.786
	SRR3591707	mature leaf	8.389
	SRR3591708	Shoot apex	12.043
	SRR3591709	Stem	10.672
	SRR3591710	White floral bud	10.959
	SRR3591711	White flower	7.131
	SRR3591712	Green floral bud	18.808
	SRR3591713	Yellow flower	3.863
SRP173429	SRR8316895	Juvenile bud stage	7.673
	SRR8316896	Juvenile bud stage	14.022
	SRR8316897	Juvenile bud stage	9.427
	SRR8316894	Third green stage	3.823
	SRR8316900	Third green stage	10.214
	SRR8316901	Third green stage	11.041
	SRR8316898	Complete white stage	3.333
	SRR8316899	Complete white stage	18.893
	SRR8316903	Complete white stage	5.924
	SRR8316902	Silver flowering stage	1.643
	SRR8316904	Silver flowering stage	4.015
	SRR8316905	Silver flowering stage	1.241
	SRR8316906	Gold flowering stage	3.783
	SRR8316907	Gold flowering stage	2.163
	SRR8316908	Gold flowering stage	3.364
SRP132670	SRR6706286	Control	9.153
	SRR6706287	Light intensity 50%	10.179
	SRR6706288	Light intensity 20%	9.625
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.821
	CNS0095593	Slightly white alabastrum(diploid) 2	10.514
	CNS0095594	Slightly white alabastrum(diploid) 3	12.671
	CNS0095595	Whole white alabastrum(diploid) 2	11.470
	CNS0095596	Whole white alabastrum(diploid) 3	8.101
	CNS0095597	Whole white alabastrum(diploid) 4	10.720
	CNS0095598	Silvery flower (diploied) 1	5.242
	CNS0095599	Silvery flower (diploied) 2	5.588
	CNS0095600	Silvery flower (diploied) 3	3.921
	CNS0095601	Golden flower (diploid) 1	4.162
	CNS0095602	Golden flower (diploid) 2	4.827
	CNS0095603	Golden flower (diploid) 3	4.366
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.608
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.332
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.072
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.661
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.734
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.071
	CNS0095610	Silvery flower (tetraploid) 1	3.231
	CNS0095611	Silvery flower (tetraploid) 2	4.192
	CNS0095612	Silvery flower (tetraploid) 3	4.214
	CNS0095613	Golden flower (tetraploid) 1	1.056
	CNS0095614	Golden flower (tetraploid) 2	3.176
	CNS0095615	Golden flower (tetraploid) 3	1.442
CRA001975	CRR073297	Stem 1	11.074
	CRR073298	Stem 2	8.489
	CRR073299	Stem 3	13.691
	CRR073300	Leaf 1	14.010
	CRR073301	Leaf 2	13.308
	CRR073302	Leaf 3	10.566
	CRR073303	Juvenile bud 1	15.379
	CRR073304	Juvenile bud 2	12.226
	CRR073305	Juvenile bud 3	12.605
	CRR073306	Third green 1	5.815
	CRR073307	Third green 2	6.592
	CRR073308	Third green 3	6.472
	CRR073309	Second white 1	5.640
	CRR073310	Second white 2	8.976
	CRR073311	Second white 3	8.432
	CRR073312	Silver flowering 1	4.396
	CRR073313	Silver flowering 2	4.069
	CRR073314	Silver flowering 3	6.138
	CRR073315	Gold flowering 1	7.271
	CRR073316	Gold flowering 2	8.228
	CRR073317	Gold flowering 3	8.177
	CRR073318	Tawny withering 1	18.137
	CRR073319	Tawny withering 2	20.421
	CRR073320	Tawny withering 3	19.124