Gene detail

Detail information of GWHGAAZE021407

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010490475.1	2.02563E-38	PREDICTED: glutamyl-tRNA reductase 2, chloroplastic-like [Camelina sativa]
COG	YP_007161057.1	1E-27	glutamyl-tRNA reductase
Swissprot	tr\|P49294\|HEM12_ARATH	9E-40	Glutamyl-tRNA reductase 2, chloroplastic (Precursor)
trEMBL	tr\|R0GVZ2\|R0GVZ2_9BRAS	8E-37	Glutamyl-tRNA reductase {ECO:0000256\|RuleBase:RU000584}
TAIR10	AT1G09940.1	4E-33	Glutamyl-tRNA reductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	52146045	52147759	+
GWHAAZE00000006	mRNA	52146045	52147759	+
GWHAAZE00000006	exon	52146045	52146217	+
GWHAAZE00000006	exon	52146627	52147140	+
GWHAAZE00000006	exon	52147224	52147759	+
GWHAAZE00000006	five_prime_UTR	52146045	52146073	+
GWHAAZE00000006	CDS	52146074	52146217	+
GWHAAZE00000006	CDS	52146627	52147140	+
GWHAAZE00000006	CDS	52147224	52147759	+

Transcript Sequence
>GWHTAAZE021431 TCTGGCGGCTTGACTTTTGTTGTCCAAGGATGTCCGTGGTAGTTTATGAGTTATCGAGCTTGCCCCATGTAGATGAAGCGGCGTTTATAAGTAGTTGCAATCGATTTGAAATCAATGCTGTAGTTCATGATCCAATTAATGCTCTTGAAGAACTATGTGCGTGGATGGCCAAGGTCAATTTCCTTCCTTCAGGAAGGAAACTTGGAAAAGTGAGAGAAGTAGCCGACGCTCTGGATGGCTTTAGTGGTTTCGGAAGGATTCTGAAGACACTGTTTGAGCACGCAATTTCAGTAGGTGAGCGGGTGGTAAGTGAAGTGAAACTGTTGAAAGACAGCTTGTCAATTACTTTGGCGTCGGCCGCTGTTGAATTGGCCTTGGCCGAGTATAAGGATTTTGACCGGCAGTCGAAGGAGTACTTGTGGTGGGACCCCCGGCCCCAAACGAAAGCCGAGCCCCAAATACTTGTTATTGGTAGTGGGTGGATGGGTGTGCTTTTGATCAAGTCTTTGTTTCATAAAGGCTACAAAACTATCACATTGTTAGAAGATTTTTTGGACAATTTCGACATGCCGAGACCCTACCCGTGGTCAAGTCTTGATCCCAGCTTATATGGAGGTGCCCTAGTAACCCACAAGCCTAGGCAAGATATGGCTTCATGCATTGCGGAAGCTGACATTGTGTTCACATATCCTCCTACTCATCTAAAATTGTTTGTTGACACTTCAATCCCTCATAATGTTGATGAGGATAGTGTGTCTCAGCTCTCTTTTTGTCGCATCCTTAACGTGGATGACATTGAAAAGGTCATACTGTGTAAGAAGAAAATGGAGGAGGATGGTAGGATGATTATGAAGCGGGTGAGGGGTTATATAGAAGAAGAGGTTGGTAAGTTTGAGAGTTGGTTTAACAAGGTGGGAGCTGTACATATTCTTCAGTCCCTTAGGGGATTTATGAAGCTTAAATACGCTCGGGAGATGGAAGAGCGCCGTCCTCCTCACGTTGTTGTTGGTCCATCGGACCATGATATCTGGAAACGACAGGTCAACATGGTCAGCAGAGTGAGGGCTGACCATTATATGGATAATTTGATTGCTCAACTTGTGAATGTTTTAGATTTATCTTTGGTTGATAGAGGAGTTCCTTTGCAACAGCTCAAGTTCAACTATGGCAGAAATGAAGAAGACGAAGAATAAGACGAAGAAGAAGAATAAATAACGACATAA

Network for GWHGAAZE021407

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02492	hemA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0033014	biological_process	tetrapyrrole biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0008883	molecular_function	glutamyl-tRNA reductase activity
GO:0050661	molecular_function	NADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.187
	SRR3591706	second leaf	0.057
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.055
	SRR3591710	White floral bud	0.232
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.061
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.467
	SRR8316896	Juvenile bud stage	0.674
	SRR8316897	Juvenile bud stage	0.105
	SRR8316894	Third green stage	0.151
	SRR8316900	Third green stage	0.926
	SRR8316901	Third green stage	0.739
	SRR8316898	Complete white stage	1.086
	SRR8316899	Complete white stage	1.530
	SRR8316903	Complete white stage	1.202
	SRR8316902	Silver flowering stage	0.606
	SRR8316904	Silver flowering stage	0.499
	SRR8316905	Silver flowering stage	0.421
	SRR8316906	Gold flowering stage	0.365
	SRR8316907	Gold flowering stage	1.150
	SRR8316908	Gold flowering stage	0.252
SRP132670	SRR6706286	Control	0.976
	SRR6706287	Light intensity 50%	0.883
	SRR6706288	Light intensity 20%	0.946
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.113
	CNS0095593	Slightly white alabastrum(diploid) 2	0.486
	CNS0095594	Slightly white alabastrum(diploid) 3	1.102
	CNS0095595	Whole white alabastrum(diploid) 2	1.454
	CNS0095596	Whole white alabastrum(diploid) 3	1.036
	CNS0095597	Whole white alabastrum(diploid) 4	1.163
	CNS0095598	Silvery flower (diploied) 1	5.685
	CNS0095599	Silvery flower (diploied) 2	3.500
	CNS0095600	Silvery flower (diploied) 3	2.226
	CNS0095601	Golden flower (diploid) 1	7.008
	CNS0095602	Golden flower (diploid) 2	2.290
	CNS0095603	Golden flower (diploid) 3	3.029
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.346
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.393
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.323
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.503
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.057
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.144
	CNS0095610	Silvery flower (tetraploid) 1	1.012
	CNS0095611	Silvery flower (tetraploid) 2	1.535
	CNS0095612	Silvery flower (tetraploid) 3	0.592
	CNS0095613	Golden flower (tetraploid) 1	0.463
	CNS0095614	Golden flower (tetraploid) 2	0.850
	CNS0095615	Golden flower (tetraploid) 3	0.320
CRA001975	CRR073297	Stem 1	0.825
	CRR073298	Stem 2	0.515
	CRR073299	Stem 3	0.163
	CRR073300	Leaf 1	1.046
	CRR073301	Leaf 2	0.623
	CRR073302	Leaf 3	0.152
	CRR073303	Juvenile bud 1	0.574
	CRR073304	Juvenile bud 2	0.235
	CRR073305	Juvenile bud 3	0.324
	CRR073306	Third green 1	0.274
	CRR073307	Third green 2	0.047
	CRR073308	Third green 3	0.105
	CRR073309	Second white 1	0.041
	CRR073310	Second white 2	0.153
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.149
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.041
	CRR073315	Gold flowering 1	0.015
	CRR073316	Gold flowering 2	0.478
	CRR073317	Gold flowering 3	0.503
	CRR073318	Tawny withering 1	2.713
	CRR073319	Tawny withering 2	3.807
	CRR073320	Tawny withering 3	2.395