Gene detail

Detail information of GWHGAAZE021387

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010490475.1	7.43713E-35	PREDICTED: glutamyl-tRNA reductase 2, chloroplastic-like [Camelina sativa]
COG	YP_007161057.1	3E-24	glutamyl-tRNA reductase
Swissprot	tr\|P49294\|HEM12_ARATH	2E-34	Glutamyl-tRNA reductase 2, chloroplastic (Precursor)
trEMBL	tr\|R0GVZ2\|R0GVZ2_9BRAS	4E-34	Glutamyl-tRNA reductase {ECO:0000256\|RuleBase:RU000584}
TAIR10	AT1G09940.1	4E-28	Glutamyl-tRNA reductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	51443351	51444901	+
GWHAAZE00000006	mRNA	51443351	51444901	+
GWHAAZE00000006	exon	51443351	51443524	+
GWHAAZE00000006	exon	51443933	51444435	+
GWHAAZE00000006	exon	51444517	51444901	+
GWHAAZE00000006	five_prime_UTR	51443351	51443380	+
GWHAAZE00000006	CDS	51443381	51443524	+
GWHAAZE00000006	CDS	51443933	51444435	+
GWHAAZE00000006	CDS	51444517	51444901	+

Transcript Sequence
>GWHTAAZE021411 CTCTGGCGGCTTGACTTTTGTTGTCCAAGGATGTCCGTGGTAGTTTATGAGTTATCGAGCTTGCCCCATGTAGATGAAGCGGCGTTTATAAGTAGTTGCAATCGATTTGAAATCAATGCTGTAGTTAATGATCCAATTAATGCTCTTGAAGAACTATGTGCGTGGATGGCCAAGGTCAATTTCCTTCCTTCAGGAAGGAAACTTGGAAAAGTGAGAGAAGTAGCCGACGCTCTGGATGGCTTTAGTGGTTTCGGAAGGATTCTGAAGACACTGTTTGAGCACGCAATTTCAGTAGGTGAGCGGGTGGTAAGTGAAGTGAAACTGTTGAAAGACAGCTTGTCAATTACTTTGGCGTCGGCCGCTGTTGAATTGGCCTTGGCCGAGTATAAGGATTTTGACCGGCAGTCGAAGGAGTACTTGTGGTGGGACCCCCGGCCCCAAACGAAAGCCGAGCCCCAAATACTTGTTATTGGTAGTGGGTGGATGGGTGTGCTTTTGATCAAGTCTTTGTTTCATAAAGGCTACAAAACTATCACATTGTTAGAAGATTTTTTGGACAATTTCGACATGCCGAGACCCTACCCGTGGTCAAGTCTTGATCCCAGCTTATATGGAGGTGCCCTAGTAACCCACAAGCCTAGGCAAGATATGGCTTCATGCATTGGGAAGCTGACATTCTCCTTGAAAGATCCTCCTACTCATCTAAAATTGTTTGTTGACACTTCAATCCCTCATAATGTTGATGAGGATAGTGTGTCTCAGCTCTCTTTTTGTCGCATCCTTAACGTGGATGACATTGAAAAGGTCATACTGTGTAAGAAGAAAATGGAGGAGGATGGTAGGATGATTATGAAGCGGGTGAGGGGTTATATAGAAGAAGAGGTTGGTAAGTTTGAGAGTTGGTTTAACAAGGTGGGAGCTGTACATATTCTTCAGTCCCTTAGGGGATTTATGAAGCTTAAATACGCTCGGGAGATGGAAGAGCCGCCCCTCCTCACGTTGTTGTTGGTCCATCGGACCATGATATCTGGAAACGACAGGTCAACATGGTCAGCAGAGTGA

Network for GWHGAAZE021387

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02492	hemA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0033014	biological_process	tetrapyrrole biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0008883	molecular_function	glutamyl-tRNA reductase activity
GO:0050661	molecular_function	NADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.051
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.088
	SRR3591710	White floral bud	0.035
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.189
	SRR8316896	Juvenile bud stage	0.166
	SRR8316897	Juvenile bud stage	0.122
	SRR8316894	Third green stage	0.154
	SRR8316900	Third green stage	0.190
	SRR8316901	Third green stage	0.341
	SRR8316898	Complete white stage	0.382
	SRR8316899	Complete white stage	0.579
	SRR8316903	Complete white stage	0.366
	SRR8316902	Silver flowering stage	0.259
	SRR8316904	Silver flowering stage	0.284
	SRR8316905	Silver flowering stage	0.293
	SRR8316906	Gold flowering stage	0.194
	SRR8316907	Gold flowering stage	0.303
	SRR8316908	Gold flowering stage	0.293
SRP132670	SRR6706286	Control	0.427
	SRR6706287	Light intensity 50%	0.390
	SRR6706288	Light intensity 20%	0.480
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.434
	CNS0095593	Slightly white alabastrum(diploid) 2	0.224
	CNS0095594	Slightly white alabastrum(diploid) 3	0.221
	CNS0095595	Whole white alabastrum(diploid) 2	0.393
	CNS0095596	Whole white alabastrum(diploid) 3	0.106
	CNS0095597	Whole white alabastrum(diploid) 4	0.541
	CNS0095598	Silvery flower (diploied) 1	2.025
	CNS0095599	Silvery flower (diploied) 2	1.197
	CNS0095600	Silvery flower (diploied) 3	0.663
	CNS0095601	Golden flower (diploid) 1	2.244
	CNS0095602	Golden flower (diploid) 2	1.206
	CNS0095603	Golden flower (diploid) 3	1.037
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.218
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.164
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.260
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.176
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.045
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.028
	CNS0095610	Silvery flower (tetraploid) 1	0.403
	CNS0095611	Silvery flower (tetraploid) 2	0.508
	CNS0095612	Silvery flower (tetraploid) 3	0.180
	CNS0095613	Golden flower (tetraploid) 1	0.253
	CNS0095614	Golden flower (tetraploid) 2	0.335
	CNS0095615	Golden flower (tetraploid) 3	0.214
CRA001975	CRR073297	Stem 1	0.557
	CRR073298	Stem 2	0.404
	CRR073299	Stem 3	0.022
	CRR073300	Leaf 1	0.589
	CRR073301	Leaf 2	0.522
	CRR073302	Leaf 3	0.175
	CRR073303	Juvenile bud 1	0.344
	CRR073304	Juvenile bud 2	0.271
	CRR073305	Juvenile bud 3	0.126
	CRR073306	Third green 1	0.227
	CRR073307	Third green 2	0.054
	CRR073308	Third green 3	0.079
	CRR073309	Second white 1	0.047
	CRR073310	Second white 2	0.176
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.172
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.047
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.304
	CRR073317	Gold flowering 3	0.099
	CRR073318	Tawny withering 1	2.016
	CRR073319	Tawny withering 2	1.237
	CRR073320	Tawny withering 3	1.063