Gene detail

Detail information of GWHGAAZE021236

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007041179.1	5.5743E-134	12-oxophytodienoate reductase 1 [Theobroma cacao]
COG	YP_545938.1	1E-74	NADH:flavin oxidoreductase/NADH oxidase
Swissprot	tr\|Q9FEX0\|OPRL_SOLLC	1E-132	12-oxophytodienoate reductase-like protein
trEMBL	tr\|A0A061DWD7\|A0A061DWD7_THECC	2E-134	12-oxophytodienoate reductase 1 {ECO:0000313\|EMBL:EOX97010.1}
TAIR10	AT1G76690.1	1E-97	12-oxophytodienoate reductase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	39490529	39496154	-
GWHAAZE00000006	mRNA	39490529	39496154	-
GWHAAZE00000006	exon	39490529	39491106	-
GWHAAZE00000006	exon	39493186	39493311	-
GWHAAZE00000006	exon	39494305	39494351	-
GWHAAZE00000006	exon	39494942	39495181	-
GWHAAZE00000006	exon	39496030	39496154	-
GWHAAZE00000006	CDS	39496030	39496154	-
GWHAAZE00000006	CDS	39494942	39495181	-
GWHAAZE00000006	CDS	39494305	39494351	-
GWHAAZE00000006	CDS	39493186	39493311	-
GWHAAZE00000006	CDS	39490529	39491106	-

Transcript Sequence
>GWHTAAZE021260 ATGACCAGAAACAGGTCATACGATAACGTTCCACAACCACATGCTGTTGAGTACTACTCTCAACGTACAACTCGTGGCGGTCTTGTCATTTCTGAATCAGCTGCAGCATGTGACATCTCGCTAGGGTGCCCAAACATGTCTGGAATCTGGAGAAAAGAACAAGTTGAAGCATGGAAACCCATTGTAAATGCTGTTCATGAAAAGGGTGGGATTTTCTTTTGCCAGATTTGGCATCCTGGCCATGTAATTGATTGTTCACAAGAAAAATACACTCAATCAGATCGAGGTATGTACAAATATTTTCAAAGTCTAATGTTTGGATTGGTATGTTCACTAGACATTGCCATGTCTAATCTATTCCTTATAAGTGTTACGGGGAAGGCAAAACAGGGGCTTTGGAGTTGGGGGTGTGAGCCTCGAGATTGGAATTCATTGTCCTGTATTTACAAGAGAGCTCCTGTTCCCCAGCCAACAGTAGATGAAATCAATTCCATTATCAACGATTTTAAGGTTGCCACGAGTAATGCCATTGAAGCTGGATTTGATGGAGTTGAGATCCATAGTGCAAATGGGTACTTGATTGATCTACTTATCAAAGACGAAGTGAACAATGAGATTGAACAGTACACTGGGAGCTTAGAGAATAGTTGTCACCTTGCACTCGAAGTGACAAAAGCAGTAGCAAATGAGATTGGAGCCGACAGAGTCGGAATAAAACTCTCCCCTTTTGAATATCCCAATCCAGAAACTCTAGGCCTTTACATGGCAAATGAACTCAGTAAACTCGGTATTCTTTATATTCACATGACTGAGCCAAGGATGATAAAAAACGATAAGGGGCACTATCAAACTCCTCGTTGTCTTTCTCCTATGAGGTTGAGTTTTAAAGGAACTTTTATCGCATCCGGGGGTTATAACAAGTCTGATGGTGACAAAGCTATAGATGAGAATTACGCGGATTTGGTATCATTTGGACGCCTGTTCTTGGCTAATCCTGATTTGCCAAAACGATTCGAGGCAAATGCACCTCTTAACATGCACAAAAGGAATAGTTTCTATATCCAGGATCCAGTGACTGGTTACACCGATTATCCATTCCTTCAAGTTGCTTCTTAA

Network for GWHGAAZE021236

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00724.21	Oxidored_FMN	1	84	7.30E-17
PF00724.21	Oxidored_FMN	158	345	1.20E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05894	OPR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0003824	molecular_function	catalytic activity
GO:0010181	molecular_function	FMN binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.010
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.840
	SRR8316901	Third green stage	0.273
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.123
	SRR8316905	Silver flowering stage	0.062
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.116
	SRR6706287	Light intensity 50%	0.202
	SRR6706288	Light intensity 20%	0.162
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.063
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	1.292
	CNS0095596	Whole white alabastrum(diploid) 3	1.458
	CNS0095597	Whole white alabastrum(diploid) 4	4.023
	CNS0095598	Silvery flower (diploied) 1	0.163
	CNS0095599	Silvery flower (diploied) 2	0.311
	CNS0095600	Silvery flower (diploied) 3	0.439
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.034
	CNS0095603	Golden flower (diploid) 3	0.137
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.056
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.503
	CRR073301	Leaf 2	0.212
	CRR073302	Leaf 3	0.002
	CRR073303	Juvenile bud 1	0.192
	CRR073304	Juvenile bud 2	0.474
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.045
	CRR073308	Third green 3	0.054
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.035
	CRR073311	Second white 3	0.134
	CRR073312	Silver flowering 1	0.926
	CRR073313	Silver flowering 2	0.659
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.196
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.110
	CRR073318	Tawny withering 1	0.240
	CRR073319	Tawny withering 2	0.312
	CRR073320	Tawny withering 3	0.089