Gene detail

Detail information of GWHGAAZE021019

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI41006.3	4.3865E-135	unnamed protein product [Vitis vinifera]
Swissprot	tr\|P0CV96\|NES1_FRAVE	9E-105	(3S,6E)-nerolidol synthase 1, chloroplastic (Precursor)
trEMBL	tr\|W9RFU1\|W9RFU1_9ROSA	3E-118	(3S,6E)-nerolidol synthase 1 {ECO:0000313\|EMBL:EXB75239.1}
TAIR10	AT1G61680.2	4E-69	terpene synthase 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	31354430	31356114	-
GWHAAZE00000006	mRNA	31354430	31356114	-
GWHAAZE00000006	exon	31355900	31356114	-
GWHAAZE00000006	exon	31355156	31355294	-
GWHAAZE00000006	exon	31354806	31355054	-
GWHAAZE00000006	exon	31354430	31354708	-
GWHAAZE00000006	CDS	31355900	31356114	-
GWHAAZE00000006	CDS	31355156	31355294	-
GWHAAZE00000006	CDS	31354806	31355054	-
GWHAAZE00000006	CDS	31354430	31354708	-

Transcript Sequence
>GWHTAAZE021043 ATGATGCGTACATCCCTTAATTGTAATGATGCTAGAGTTGTTAGTAATACACTAAAGCATCCATATCATAAGAGCCTAGCAAAATTCACGGCAAAGAACTTTATAAGAGATTACAATGGTGCACATGTGAGAAAAAACGCCTTGCAAGAACTTGCCAAAATGAATTTTGATATGTCTCAATCTCTACACATAAAGGAACTAGTCGAGATCTCAAGATGGGATTTTGCGGCTACAGAACAACTACCAGATTACATGAAGATATGTTTCAAGGCACTGTATGACACCACTAACGAAATCGGGTGCAACATTTATAAGGAATATGGATGGAACCCCTTGGACTCGTTACAAAAAGCCTGGGCGAGTTTGTTTGATGCATTTCTTGTAGAAGCACAATGGTTTGCATCGGGGCACGTGCCGAAGGCGGACGAGTACTTGAAGAATGGGATTGTTAGTTCAGGGGTACATGTTGTGTTAGTCCACTTGTTCTTTCTCTTGGGCGAAGGTGCAAACAAGGAAAGCGCAAACATTGTTAATGATAATACAGACATTATATCTTCTGTGGCTTCAATCCTTCGACTTTGGGATGACTTGGGAAGTGCCAAGGATGAGAATCAAGACGGTCATGACGGATCATACATAACTTGTTACATGGAAGAACACCAAGGTTCATCCGCGGATGTTGCGAGACAAGAAGCTATTAAGAAGATAACTGAAGCGTGGAGGAGGCTGAACAAGGAGTGCTTATCGCCGAATCCATTTTCGCGAACTTTTATAAAGGCTTCTCTTAATCTTGCAAGAATGGTTCCATTAATGTACAGTTATGATGAGAATCAAGATCTTCCGGATCTTGAGCAGCATATAAAGTCAATGCTCGCTCTATGA

Network for GWHGAAZE021019

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03936.17	Terpene_synth_C	70	241	7.10E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14175	NES1	Metabolic pathways	map01100
K14175	NES1	Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0000287	molecular_function	magnesium ion binding
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.080
	SRR3591706	second leaf	0.175
	SRR3591707	mature leaf	0.116
	SRR3591708	Shoot apex	0.013
	SRR3591709	Stem	0.136
	SRR3591710	White floral bud	96.062
	SRR3591711	White flower	442.605
	SRR3591712	Green floral bud	0.172
	SRR3591713	Yellow flower	518.708
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.030
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.016
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.070
	CNS0095593	Slightly white alabastrum(diploid) 2	0.087
	CNS0095594	Slightly white alabastrum(diploid) 3	0.083
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.008
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.045
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.009
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.034
	CRR073316	Gold flowering 2	0.018
	CRR073317	Gold flowering 3	0.020
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.005
	CRR073320	Tawny withering 3	0.000