Gene detail

Detail information of GWHGAAZE021015

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274177.2	1.0028E-129	PREDICTED: NAC domain-containing protein 2 [Vitis vinifera]
Swissprot	tr\|Q9C598\|NAC81_ARATH	6E-110	Protein ATAF2
trEMBL	tr\|F6H4F0\|F6H4F0_VITVI	4E-130	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47161.1}
TAIR10	AT5G08790.1	5E-87	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	31195280	31196877	-
GWHAAZE00000006	mRNA	31195280	31196877	-
GWHAAZE00000006	exon	31195280	31195753	-
GWHAAZE00000006	exon	31195986	31196266	-
GWHAAZE00000006	exon	31196712	31196877	-
GWHAAZE00000006	CDS	31196712	31196877	-
GWHAAZE00000006	CDS	31195986	31196266	-
GWHAAZE00000006	CDS	31195280	31195753	-

Transcript Sequence
>GWHTAAZE021039 ATGAAGGGTGGTGATCAATTGGATTTACCGGCCGGATTTAGATTCCATCCGACCGACGAGGAGCTTGTTTTGCATTACTTGTGCCGTAAATGTGCGGCGCAGCCGATTGCTGTTCCGATTATTGCCGAGATTGATCTTTATAAGTTTGATCCATGGCAACTTCCTGGAATGGCAATGTATGGCGAAAAGGAATGGTACTTTTTCTCGCCAAGGGACCGAAAGTACCCCAATGGTTCGCGGCCTAACAGGGCTGCCGGAACAGGGTACTGGAAGGCCACCGGAGCCGATAAGCCTGTGGGTAAACCCAAGACTTTGGGGATTAAAAAGGCGCTAGTGTTCTACGCTGGAAAAGCACCTAAAGGCGTCAAAACAAATTGGATCATGCACGAATATCGCTTAGCTAATGTGGATCGATCCGCTGGTGCTGGAAAGAAAAACAATTTAAGGCTTGATGATTGGGTATTATGTCGAATATACAACAAGAAAGGTATCATTGAGAAGCATTACACTGTGGTGGATAAAACGTTGGATGTACCAGATATGGAAGAAAAGAAACCCGAAATTTCAACATTGGGCTATAATCATGTAAATTTCACAAAAATGCAGCCGCCACAACAACCACCACCACCACCATGGGTAGCACAAACAGTGAATCATAGTGACTACAACTACAATTTTCAAACATCATCATCATCGGAATATTCGACGCAACCGTCGAGGTTAAATGGCTATTCTAGTTCGACGTCGGGGCAAGCGGAGTTGATGTTTGAGAAGGAAGCCGAGGTCCAAAGCGATCCAAAATGGAATAACAATAACAATTATTTTGATTTTAGCAATTACATGGATACATTTGCAGATGATCCTTTTGCACCTCAAACCCAGTATAATGACTACCAGGATTTGTTCTTGTTCAATTGTTGA

Network for GWHGAAZE021015

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	10	133	2.60E-38

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.643
	SRR3591706	second leaf	6.693
	SRR3591707	mature leaf	2.866
	SRR3591708	Shoot apex	3.111
	SRR3591709	Stem	14.044
	SRR3591710	White floral bud	3.181
	SRR3591711	White flower	10.715
	SRR3591712	Green floral bud	2.431
	SRR3591713	Yellow flower	8.309
SRP173429	SRR8316895	Juvenile bud stage	18.395
	SRR8316896	Juvenile bud stage	3.334
	SRR8316897	Juvenile bud stage	9.695
	SRR8316894	Third green stage	1.913
	SRR8316900	Third green stage	3.385
	SRR8316901	Third green stage	7.057
	SRR8316898	Complete white stage	0.671
	SRR8316899	Complete white stage	7.672
	SRR8316903	Complete white stage	0.846
	SRR8316902	Silver flowering stage	3.670
	SRR8316904	Silver flowering stage	10.430
	SRR8316905	Silver flowering stage	4.320
	SRR8316906	Gold flowering stage	19.869
	SRR8316907	Gold flowering stage	12.951
	SRR8316908	Gold flowering stage	28.209
SRP132670	SRR6706286	Control	5.539
	SRR6706287	Light intensity 50%	8.480
	SRR6706288	Light intensity 20%	7.333
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.515
	CNS0095593	Slightly white alabastrum(diploid) 2	24.202
	CNS0095594	Slightly white alabastrum(diploid) 3	19.483
	CNS0095595	Whole white alabastrum(diploid) 2	16.709
	CNS0095596	Whole white alabastrum(diploid) 3	3.290
	CNS0095597	Whole white alabastrum(diploid) 4	9.986
	CNS0095598	Silvery flower (diploied) 1	12.840
	CNS0095599	Silvery flower (diploied) 2	27.043
	CNS0095600	Silvery flower (diploied) 3	12.424
	CNS0095601	Golden flower (diploid) 1	31.760
	CNS0095602	Golden flower (diploid) 2	35.045
	CNS0095603	Golden flower (diploid) 3	34.557
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.788
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.419
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.445
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.095
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.497
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.659
	CNS0095610	Silvery flower (tetraploid) 1	3.194
	CNS0095611	Silvery flower (tetraploid) 2	0.988
	CNS0095612	Silvery flower (tetraploid) 3	2.886
	CNS0095613	Golden flower (tetraploid) 1	2.245
	CNS0095614	Golden flower (tetraploid) 2	4.786
	CNS0095615	Golden flower (tetraploid) 3	0.646
CRA001975	CRR073297	Stem 1	10.095
	CRR073298	Stem 2	6.708
	CRR073299	Stem 3	3.044
	CRR073300	Leaf 1	10.292
	CRR073301	Leaf 2	15.313
	CRR073302	Leaf 3	5.380
	CRR073303	Juvenile bud 1	7.997
	CRR073304	Juvenile bud 2	7.867
	CRR073305	Juvenile bud 3	8.193
	CRR073306	Third green 1	19.833
	CRR073307	Third green 2	13.666
	CRR073308	Third green 3	15.301
	CRR073309	Second white 1	5.800
	CRR073310	Second white 2	11.833
	CRR073311	Second white 3	7.968
	CRR073312	Silver flowering 1	32.219
	CRR073313	Silver flowering 2	15.933
	CRR073314	Silver flowering 3	12.085
	CRR073315	Gold flowering 1	6.070
	CRR073316	Gold flowering 2	19.494
	CRR073317	Gold flowering 3	9.940
	CRR073318	Tawny withering 1	8.633
	CRR073319	Tawny withering 2	30.735
	CRR073320	Tawny withering 3	5.200