Gene detail

Detail information of GWHGAAZE020961

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009781239.1	0	PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Nicotiana sylvestris]
COG	YP_004050921.1	3E-15	wd40 repeat, subgroup
Swissprot	tr\|Q8W117\|SMU1_ARATH	5E-10	Suppressor of mec-8 and unc-52 protein homolog 1
trEMBL	tr\|D7THK7\|D7THK7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30523.3}
TAIR10	AT4G04940.1	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	28509053	28520777	-
GWHAAZE00000006	mRNA	28509053	28520777	-
GWHAAZE00000006	exon	28509053	28509202	-
GWHAAZE00000006	exon	28510069	28510283	-
GWHAAZE00000006	exon	28510390	28510615	-
GWHAAZE00000006	exon	28512682	28512955	-
GWHAAZE00000006	exon	28517544	28517838	-
GWHAAZE00000006	exon	28517929	28518013	-
GWHAAZE00000006	exon	28518515	28518727	-
GWHAAZE00000006	exon	28520461	28520688	-
GWHAAZE00000006	exon	28520769	28520777	-
GWHAAZE00000006	CDS	28520769	28520777	-
GWHAAZE00000006	CDS	28520461	28520688	-
GWHAAZE00000006	CDS	28518515	28518727	-
GWHAAZE00000006	CDS	28517929	28518013	-
GWHAAZE00000006	CDS	28517544	28517838	-
GWHAAZE00000006	CDS	28512682	28512955	-
GWHAAZE00000006	CDS	28510390	28510615	-
GWHAAZE00000006	CDS	28510069	28510283	-
GWHAAZE00000006	CDS	28509053	28509202	-

Transcript Sequence
>GWHTAAZE020985 ATGCAAGAGCCATTTCCTTATATATATATATATATATTTATATTTGATCTAAAATTATTTATCATTTTTGCTGTTTTGTTCCATGAACTCTGTTCAGCTGAAATTAGGGAGCGTGACTGGTGTAACGTGGTTACCTGTCATATGGATACTGCACAAGCATATGTATGGAGGCTTCAAAATTTTGTTCTCGGTGAACATATCCTCACCCCATCTCCTGAACATCAAACTCCAGTTAAGGCATGTGCCATCAGTGCATGTGGAAATTTTGCTGTTATAGGGACAGCAGGGGGTTGGATTGAGCGGTTTAATCTTCAATCAGGAATAAGCCGAGGCAGTTATGTCGACATGCTAGAAAAAAGCAGCTGTGCCCATGATGGGGAAGTAGTCGGTGTTGCCTGTGATTCAACAAATACCTTGATGATCAGTGCAGGCTATCATGGGGATATGAAGGTTTGGGATTTCAAGGGACGTGAGCTAAAATTCAGATGGGATGTAGGTTGTGCGGTGGTTAAGATCGTTTACCACCGTTCTAATGGGCTTCTGGCTACAGTGGCAGATGATTTAGTTATCCGTTTGTATGATGTTGTGGCACAAAGAATTGTACGTAAATTCGAGGGTCATGCAGATCGTATTACAGACGCGTGTTTCAGTGAGGATGGGAAGTGGCTTTTGTCATCCAGCATGGATGGGACTCTTCGAATTTGGGATGTTATCTTAGCAAGACAGATAGATGCGATTAATGTTGATGTTTCTATAACCGCACTCTCTTTGTCACCCAATATGGATGTTTTAGCAACTACTCATGTTGATCAAAATGGTGTTTACCTCTGGGTTAATCAGGCAATGTTTTCTGGAGCATCTGGTGTCGATTCTTATGGAAGTGGAAAGGAAATTGTGAGCGTTAAGTTGCCGTCCATTTCTTCAACAGAAGGTTCTGCTAAAGATGATATTGATTCTGATGATAAATCCATAGTGAGCTGCTCGCAGTTCCAAGATACTACTACTAACCTATCACATTTGGATCAGCAAATACCAAATTTAGTCACCCTTTCACTATTACCAAAGAGCCAGTGGCAAGGGTTGATCAATTTAGACATTATAAAGGCCCGAAACAAGCCGATTGAGCCTCCGAAAAAACCCGAAAAGGTGCCATTCTTCTTGCCTTCAATTCCATCACTATCTGGAGAAATATTGTTTAAAGCTAGTGAGCCCACTAATGAAGAGAATGGTATACAAGCTGCTGATAGATTGGAAAAAAGTAGGAGAAGACTCGATACTCCTTCATCCCAGTTCTTACAAGTTCTTCACTCATCTGCAGAGATTAATGATTTTTCGGGATTCACTGATTATGTGAAAAGTCTATCTTCGTCGACATTGGAAATGGAACTTCGAATGCTTCAGATTATAGATGACGACGATGATCAAGAGGTGGAGAAGAGACTGGAATTGTATTCTATTGAACTTTTGCTGGATTATTTTATACACGAGATTTCACATAGAAACAACTACGAGTTCATACAAGCTCTCATCAGATTGTTTTTAAAGATTCATGGAGAAACAATCCGAAGGCAGAAAAAGATACAGGAGAAGGCGCAGAAGCTTTTAGAAGTTCACTGCGGCGTATGGCAAAGATTAGATGGGTTGCTTCAGAGCGGTCGATGCAAACTTACTTTCCTTAGTAATTCTCAATTTTAG

Network for GWHGAAZE020961

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	200	236	1.50E-10
PF04192.13	Utp21	334	559	6.60E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14554	UTP21, WDR36	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0006364	biological_process	rRNA processing
GO:0032040	cellular_component	small-subunit processome
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.605
	SRR3591706	second leaf	7.857
	SRR3591707	mature leaf	6.418
	SRR3591708	Shoot apex	15.680
	SRR3591709	Stem	10.460
	SRR3591710	White floral bud	9.373
	SRR3591711	White flower	18.747
	SRR3591712	Green floral bud	21.816
	SRR3591713	Yellow flower	14.043
SRP173429	SRR8316895	Juvenile bud stage	10.416
	SRR8316896	Juvenile bud stage	15.003
	SRR8316897	Juvenile bud stage	6.634
	SRR8316894	Third green stage	5.526
	SRR8316900	Third green stage	12.173
	SRR8316901	Third green stage	10.592
	SRR8316898	Complete white stage	2.271
	SRR8316899	Complete white stage	11.893
	SRR8316903	Complete white stage	4.508
	SRR8316902	Silver flowering stage	6.993
	SRR8316904	Silver flowering stage	10.693
	SRR8316905	Silver flowering stage	5.001
	SRR8316906	Gold flowering stage	17.884
	SRR8316907	Gold flowering stage	23.062
	SRR8316908	Gold flowering stage	19.982
SRP132670	SRR6706286	Control	7.385
	SRR6706287	Light intensity 50%	7.787
	SRR6706288	Light intensity 20%	9.014
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.067
	CNS0095593	Slightly white alabastrum(diploid) 2	10.268
	CNS0095594	Slightly white alabastrum(diploid) 3	13.713
	CNS0095595	Whole white alabastrum(diploid) 2	7.346
	CNS0095596	Whole white alabastrum(diploid) 3	9.096
	CNS0095597	Whole white alabastrum(diploid) 4	6.456
	CNS0095598	Silvery flower (diploied) 1	9.726
	CNS0095599	Silvery flower (diploied) 2	7.175
	CNS0095600	Silvery flower (diploied) 3	13.240
	CNS0095601	Golden flower (diploid) 1	8.346
	CNS0095602	Golden flower (diploid) 2	10.945
	CNS0095603	Golden flower (diploid) 3	11.441
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.034
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.550
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.668
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.245
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.532
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.932
	CNS0095610	Silvery flower (tetraploid) 1	9.671
	CNS0095611	Silvery flower (tetraploid) 2	8.818
	CNS0095612	Silvery flower (tetraploid) 3	6.333
	CNS0095613	Golden flower (tetraploid) 1	3.852
	CNS0095614	Golden flower (tetraploid) 2	7.047
	CNS0095615	Golden flower (tetraploid) 3	5.560
CRA001975	CRR073297	Stem 1	8.883
	CRR073298	Stem 2	6.560
	CRR073299	Stem 3	5.140
	CRR073300	Leaf 1	4.555
	CRR073301	Leaf 2	4.720
	CRR073302	Leaf 3	4.456
	CRR073303	Juvenile bud 1	4.192
	CRR073304	Juvenile bud 2	2.134
	CRR073305	Juvenile bud 3	5.959
	CRR073306	Third green 1	3.429
	CRR073307	Third green 2	2.768
	CRR073308	Third green 3	3.504
	CRR073309	Second white 1	6.340
	CRR073310	Second white 2	5.305
	CRR073311	Second white 3	6.496
	CRR073312	Silver flowering 1	7.034
	CRR073313	Silver flowering 2	8.732
	CRR073314	Silver flowering 3	8.147
	CRR073315	Gold flowering 1	1.434
	CRR073316	Gold flowering 2	3.564
	CRR073317	Gold flowering 3	1.633
	CRR073318	Tawny withering 1	5.411
	CRR073319	Tawny withering 2	5.766
	CRR073320	Tawny withering 3	7.579