Gene detail

Detail information of GWHGAAZE020803

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009401140.1	4.4715E-169	PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
COG	NP_811992.1	5E-106	cysteine synthase A
Swissprot	tr\|O81155\|CYSKP_SOLTU	1E-157	Cysteine synthase, chloroplastic/chromoplastic (Precursor)
trEMBL	tr\|M0SZ91\|M0SZ91_MUSAM	2E-169	Cysteine synthase {ECO:0000256\|RuleBase:RU003985}
TAIR10	AT2G43750.2	3E-111	O-acetylserine (thiol) lyase B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	21857213	21871280	-
GWHAAZE00000006	mRNA	21857213	21871280	-
GWHAAZE00000006	exon	21871041	21871280	-
GWHAAZE00000006	exon	21868483	21868592	-
GWHAAZE00000006	exon	21867856	21867913	-
GWHAAZE00000006	exon	21866077	21866340	-
GWHAAZE00000006	exon	21865211	21865266	-
GWHAAZE00000006	exon	21864498	21864633	-
GWHAAZE00000006	exon	21863638	21863689	-
GWHAAZE00000006	exon	21863449	21863528	-
GWHAAZE00000006	exon	21862207	21862266	-
GWHAAZE00000006	exon	21861005	21861085	-
GWHAAZE00000006	exon	21860577	21860644	-
GWHAAZE00000006	exon	21857213	21857348	-
GWHAAZE00000006	CDS	21871041	21871280	-
GWHAAZE00000006	CDS	21868483	21868592	-
GWHAAZE00000006	CDS	21867856	21867913	-
GWHAAZE00000006	CDS	21866077	21866340	-
GWHAAZE00000006	CDS	21865211	21865266	-
GWHAAZE00000006	CDS	21864498	21864633	-
GWHAAZE00000006	CDS	21863638	21863689	-
GWHAAZE00000006	CDS	21863449	21863528	-
GWHAAZE00000006	CDS	21862207	21862266	-
GWHAAZE00000006	CDS	21861005	21861085	-
GWHAAZE00000006	CDS	21860577	21860644	-
GWHAAZE00000006	CDS	21857213	21857348	-

Transcript Sequence
>GWHTAAZE020827 ATGGCGTCTTTGATGAGCAAAACGTTGCCGTCATCTCTATACAACTCCAACTCCAACTTCGAGCTTTCTCCTCCTCCACGAGCAGCTCACTCGTTGAAAACTTGCCGAATCGGTTTCCTTAGCAATACGAACCTGAAGAAATCTCAGATAACCTCTTCTCGTATCGCCTGTAAAGCTGTGTCTGTTCAACAGCCAGAAACTGAGATTGAAGGCCTAAACATTGCTGAAGATGTTACTCAGCTTATTGGGAATACACCGATGGTGTACCTAAATAACGTTGTAAAGGGCTCAGTTGCAAATATAGCTGCCAAGCTCGAGATCATGCAACCATGTTGCAGTGTCAAGGACAGAATAGGATTCAGTATGATAGCTGATGCTGAGCAGAAGGGACTCATCACTCCAGGGAAGAGTATTTTGGTGGAGCCTACAAGTGGAAACACTGGCATCGGCCTTGCATTTATAGCCGCTTCAAAAGGATATAAGCTCATCTTGACAATGCCAGCATCAATGAGTCTAGAAAGAAGGGTTCTTTTGAAAGCATTTGGAGCTGAGCTTGTTTTAACTGATTCTGCTAAAGGCATGAAGGGGGCATGTCAGAAAGCAGAAGAAATATTGAATAGCACACCGAATGCGTACATGCTTCAACAATTTGACAACCCTGCAAACCCTAAGGTCTACCCTCATGGGCATTTGTGTTGTCTCATTAGGAGCTTGTCTAAGAAGATTGGATACATTTCGAGACAACTGGGCGGAGATCTGGGAAGATACGAGAGGCAAGGTGGACATTTTATTGCTGGGATTGGAACTGGTGGAACTATATCAGGGGTTGGTCGGTTTCTTAAACAGCAAAATCCTAACATCAAGGTTATTGGCATAGAACCTGCAGAAAGCAGCGTACTTTCAGGTGGAAAGCCTGGCCCTCACAAAATTCAAGGAATTGGAGCAGGTTTTGTACCAGGGAACTTAGACCGAGATGTAATAGATGAAGTTATGCAGATTACTAGTGATGAATCTGTTGAAATGGCAAAGAAGTTGGCACTGCAAGAAGGCTTGTTGGTAGGGATTTCTTCTGGAGCAGCTGCAGCTGTTGCCATTAAGGTTGCGAAGAGACCCGAGAATGCAGGAAAGCTTATCGTGAAAGCCATGCACACATTCAGAAGCACCTCGAGACATTTACTTATAGCTGTGGGTTGGGTTAGGGACAGGTTTGCACCCAAGACCAAGAACTTGGTGGTCGCGGGTGGCTTGGCTGGGTTTGTCTTTGGGGTTTATTTGTACACCATGAGAGCTGTCGGTGGTTCAGACGAGCTTCGAATAGCTATCGATAAGTTTGAATCCTAG

Network for GWHGAAZE020803

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.26	PALP	78	376	2.00E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01738	cysK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006535	biological_process	cysteine biosynthetic process from serine
GO:0004124	molecular_function	cysteine synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.819
	SRR3591706	second leaf	80.768
	SRR3591707	mature leaf	152.763
	SRR3591708	Shoot apex	61.668
	SRR3591709	Stem	41.363
	SRR3591710	White floral bud	25.572
	SRR3591711	White flower	46.388
	SRR3591712	Green floral bud	32.118
	SRR3591713	Yellow flower	48.673
SRP173429	SRR8316895	Juvenile bud stage	40.783
	SRR8316896	Juvenile bud stage	50.901
	SRR8316897	Juvenile bud stage	28.128
	SRR8316894	Third green stage	20.328
	SRR8316900	Third green stage	63.707
	SRR8316901	Third green stage	57.603
	SRR8316898	Complete white stage	30.266
	SRR8316899	Complete white stage	69.177
	SRR8316903	Complete white stage	34.841
	SRR8316902	Silver flowering stage	32.193
	SRR8316904	Silver flowering stage	38.802
	SRR8316905	Silver flowering stage	20.727
	SRR8316906	Gold flowering stage	92.095
	SRR8316907	Gold flowering stage	86.064
	SRR8316908	Gold flowering stage	99.954
SRP132670	SRR6706286	Control	66.291
	SRR6706287	Light intensity 50%	64.362
	SRR6706288	Light intensity 20%	71.632
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.035
	CNS0095593	Slightly white alabastrum(diploid) 2	42.190
	CNS0095594	Slightly white alabastrum(diploid) 3	37.182
	CNS0095595	Whole white alabastrum(diploid) 2	37.499
	CNS0095596	Whole white alabastrum(diploid) 3	38.704
	CNS0095597	Whole white alabastrum(diploid) 4	31.558
	CNS0095598	Silvery flower (diploied) 1	71.365
	CNS0095599	Silvery flower (diploied) 2	60.063
	CNS0095600	Silvery flower (diploied) 3	73.915
	CNS0095601	Golden flower (diploid) 1	59.315
	CNS0095602	Golden flower (diploid) 2	71.761
	CNS0095603	Golden flower (diploid) 3	65.670
	CNS0095604	Slightly white alabastrum(tetraploid) 1	49.594
	CNS0095605	Slightly white alabastrum(tetraploid) 2	45.451
	CNS0095606	Slightly white alabastrum(tetraploid) 3	66.346
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.285
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.211
	CNS0095609	Whole white alabastrum(tetraploid) 3	61.743
	CNS0095610	Silvery flower (tetraploid) 1	110.224
	CNS0095611	Silvery flower (tetraploid) 2	116.552
	CNS0095612	Silvery flower (tetraploid) 3	106.464
	CNS0095613	Golden flower (tetraploid) 1	59.957
	CNS0095614	Golden flower (tetraploid) 2	90.903
	CNS0095615	Golden flower (tetraploid) 3	71.600
CRA001975	CRR073297	Stem 1	66.039
	CRR073298	Stem 2	54.767
	CRR073299	Stem 3	65.432
	CRR073300	Leaf 1	53.962
	CRR073301	Leaf 2	56.932
	CRR073302	Leaf 3	57.458
	CRR073303	Juvenile bud 1	57.983
	CRR073304	Juvenile bud 2	55.646
	CRR073305	Juvenile bud 3	56.689
	CRR073306	Third green 1	43.579
	CRR073307	Third green 2	32.621
	CRR073308	Third green 3	35.828
	CRR073309	Second white 1	57.578
	CRR073310	Second white 2	51.938
	CRR073311	Second white 3	44.300
	CRR073312	Silver flowering 1	37.861
	CRR073313	Silver flowering 2	39.180
	CRR073314	Silver flowering 3	34.673
	CRR073315	Gold flowering 1	259.376
	CRR073316	Gold flowering 2	329.775
	CRR073317	Gold flowering 3	182.251
	CRR073318	Tawny withering 1	56.438
	CRR073319	Tawny withering 2	60.319
	CRR073320	Tawny withering 3	48.062