Gene detail

Detail information of GWHGAAZE020725

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006373524.1	0	hypothetical protein POPTR_0017s14510g [Populus trichocarpa]
COG	YP_007146928.1	0.0000004	NB-ARC domain-containing protein
Swissprot	tr\|Q39214\|RPM1_ARATH	7E-48	Disease resistance protein RPM1
trEMBL	tr\|B9N1W0\|B9N1W0_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP51321.1}
TAIR10	AT3G07040.1	6E-36	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	19282405	19284604	-
GWHAAZE00000006	mRNA	19282405	19284604	-
GWHAAZE00000006	exon	19282405	19282657	-
GWHAAZE00000006	exon	19282762	19282823	-
GWHAAZE00000006	exon	19282913	19283344	-
GWHAAZE00000006	exon	19283489	19284604	-
GWHAAZE00000006	CDS	19283489	19284604	-
GWHAAZE00000006	CDS	19282913	19283344	-
GWHAAZE00000006	CDS	19282762	19282823	-
GWHAAZE00000006	CDS	19282405	19282657	-

Transcript Sequence
>GWHTAAZE020749 ATGGTTGGAAGGGATAAAGAGGTTAAAATGCTGAAAGATTGGCTTCTTGAGGAGGATGAAGATACACCATCTCTTGTTGCAGTTACCGGAATTGGTGGGATTGGCAAAACTGCTGTTGCAGCTACAGTTTATGAGATTTCAAAGCCATATTTTGATTGTGCTGCATGGGTTTTTGTATCTGGTCAACCAACTATAGCTATTCTAAGAGAAATGCTTATGGGGTTTTCTAGGACTCCATTTGAGAGAGTGGATGAACGGTATTTGGATGAAATGGATGAGAAAGAATTGGGAGAGAGGGTTTATAATTTCTTGGATGGGAAGAAGTTCTTGCTCGTTATGGATGACTTAGATACATTAAATGCTTGGGAAAATTTGAAGTATTCATTGCCTATGAAATGCGTAGGAAAGGTATTCATAACGACTCGACAACCAGCATTCCCTGCTGTTCTTTGTAAGCGTGTTCTCCAATTGGATCCGCTAAATCCTAAAGGTTCTTTTGAATTGATACGCAGAAGAGCTTGCTTGCAGCATTACGAACGTGGTGAAGTGCCCTGGTCTTCTTCAGCAGAACCAACAGTAGAGAAAATTTTGCACTTCTGTGGAGGCCACCCCCTTCTTGTTGCAACCGTTGGGGGAATGATTACAACAGCCAATATTGAGGAACCTGGCGAGTGGGAAAAGGTTCTCTTTATTATGAAGGAGGTAGGTGAGCGTTGGCCTCAATTCGACATGATCCAGAAGGTTCTTGTAGTAAGTTACTTTAACCTACCACCTCTTTTGAAGTGCTGCTTACTTTACTGTGCGGTTTTTCCGTGTCATTATGAAATCTCTTGTAAGAGACTGATTCGAATCTGGGTTGCCGAGGGCTTTATAGCAAAACAACTTCTTGGTATGACAGAAGAGGAAATTGCAAAAAACCTCTTGGAAGACCTGATTCATAGGAACCTACTTGAAGTAGCAAAAGTGGGCACAAATGGGGAGCTTATCTCATGTAGGCTTCTTCAGTTAGTGCAAGATTTTATCCTTAAACTGTTGAACAAGGATCATTCTTGGATCATGTCCAACAGCGTTGAACGATTTGGTCATCAGAGGCAATTCGTGTCCTTGCAGTGCATGTTGCAAAATAGTCCAATTGATGCCTTGCCAGATGCAGTTGGAAATCTTGTTTTATTGCGTTACATAAGCTTGAGGGGTACAATGATTAATAATTTGCCCCCATTGCTAAATAGTTTGCATGAACTACAAACACTTGATATCAGGGACACAAACGTCAGAGCCTTGCCTGCCGGTTTTGATGGCCTTAAGATGTTAAGGCACCTCCTTCTTTCAGGTTCATTTAGCAAAAAAGTGGTGAAGCTTAATGGGGATATCATGTTTTACAACGATCTCCAAACGCTTGCAGGTGTCAAACTTACACAACAAATTGCATTAGGGTTAAAATACCTTCCTCAACTCTTAAAGTTGTCTGTGGGTGAAGTAGAAGGCAAAGAAAACTCGCTGCAGCTCTCTAAATCCATCGACCAGATGAAAAACCTGAATTCCTTGACGGATTTGCTTGGTTGGGTTTCTATGCTGAAGTCCCTCAAGCATCTCTACTTATGGGACTGTATCGGCTTTCCTAGTCTCAAGAAGCTGTCACTTGTCAAGTTCGAATTGCTTGAGGAATGGACAAACATAGAGGATGGATCTATGAAGATCCTTCAGACTATAATCATAAGTAAATGTCCAAGACTAAAGCAGCCACCCAAAGGGCTTAAAAATCTCGTTGATCTCCAAATATTGCAGATTAAGGACATGCCCCCAGAATTTGTTAGAGAGGCTAGAGAACTATCTTTACACGCAGCCTTACATTGTTCAGTTTAG

Network for GWHGAAZE020725

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	5	230	2.20E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13457	RPM1, RPS3	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.250
	SRR3591706	second leaf	0.137
	SRR3591707	mature leaf	0.098
	SRR3591708	Shoot apex	0.264
	SRR3591709	Stem	0.131
	SRR3591710	White floral bud	0.843
	SRR3591711	White flower	0.857
	SRR3591712	Green floral bud	0.898
	SRR3591713	Yellow flower	0.577
SRP173429	SRR8316895	Juvenile bud stage	0.161
	SRR8316896	Juvenile bud stage	0.265
	SRR8316897	Juvenile bud stage	0.329
	SRR8316894	Third green stage	0.179
	SRR8316900	Third green stage	0.430
	SRR8316901	Third green stage	0.581
	SRR8316898	Complete white stage	0.191
	SRR8316899	Complete white stage	0.158
	SRR8316903	Complete white stage	0.259
	SRR8316902	Silver flowering stage	0.119
	SRR8316904	Silver flowering stage	0.192
	SRR8316905	Silver flowering stage	0.122
	SRR8316906	Gold flowering stage	0.273
	SRR8316907	Gold flowering stage	0.226
	SRR8316908	Gold flowering stage	0.283
SRP132670	SRR6706286	Control	0.142
	SRR6706287	Light intensity 50%	0.165
	SRR6706288	Light intensity 20%	0.175
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.342
	CNS0095593	Slightly white alabastrum(diploid) 2	0.341
	CNS0095594	Slightly white alabastrum(diploid) 3	0.198
	CNS0095595	Whole white alabastrum(diploid) 2	0.327
	CNS0095596	Whole white alabastrum(diploid) 3	0.242
	CNS0095597	Whole white alabastrum(diploid) 4	0.319
	CNS0095598	Silvery flower (diploied) 1	0.186
	CNS0095599	Silvery flower (diploied) 2	0.108
	CNS0095600	Silvery flower (diploied) 3	0.310
	CNS0095601	Golden flower (diploid) 1	0.160
	CNS0095602	Golden flower (diploid) 2	0.190
	CNS0095603	Golden flower (diploid) 3	0.236
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.830
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.709
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.378
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.516
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.189
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.756
	CNS0095610	Silvery flower (tetraploid) 1	1.188
	CNS0095611	Silvery flower (tetraploid) 2	0.571
	CNS0095612	Silvery flower (tetraploid) 3	0.795
	CNS0095613	Golden flower (tetraploid) 1	0.489
	CNS0095614	Golden flower (tetraploid) 2	0.562
	CNS0095615	Golden flower (tetraploid) 3	0.449
CRA001975	CRR073297	Stem 1	0.143
	CRR073298	Stem 2	0.253
	CRR073299	Stem 3	0.166
	CRR073300	Leaf 1	0.393
	CRR073301	Leaf 2	0.154
	CRR073302	Leaf 3	0.449
	CRR073303	Juvenile bud 1	0.479
	CRR073304	Juvenile bud 2	0.094
	CRR073305	Juvenile bud 3	0.138
	CRR073306	Third green 1	0.035
	CRR073307	Third green 2	0.160
	CRR073308	Third green 3	0.089
	CRR073309	Second white 1	0.152
	CRR073310	Second white 2	0.024
	CRR073311	Second white 3	0.050
	CRR073312	Silver flowering 1	0.088
	CRR073313	Silver flowering 2	0.055
	CRR073314	Silver flowering 3	0.140
	CRR073315	Gold flowering 1	0.022
	CRR073316	Gold flowering 2	0.015
	CRR073317	Gold flowering 3	0.037
	CRR073318	Tawny withering 1	0.139
	CRR073319	Tawny withering 2	0.035
	CRR073320	Tawny withering 3	0.264