Gene detail

Detail information of GWHGAAZE020615

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHF22089.1	0	CYP79D33 [Maesa lanceolata]
COG	YP_003950164.1	6E-24	cytochrome p450
Swissprot	tr\|Q9M7B8\|C79D1_MANES	0	Valine N-monooxygenase 1
trEMBL	tr\|W0FG45\|W0FG45_POPTR	0	Cytochrome P450 {ECO:0000313\|EMBL:AHF20912.1}
TAIR10	AT5G05260.1	1E-159	cytochrome p450 79a2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	12746782	12748564	+
GWHAAZE00000006	mRNA	12746782	12748564	+
GWHAAZE00000006	exon	12746782	12747777	+
GWHAAZE00000006	exon	12747869	12748564	+
GWHAAZE00000006	CDS	12746782	12747777	+
GWHAAZE00000006	CDS	12747869	12748564	+

Transcript Sequence
>GWHTAAZE020639 TTTAGCAACACGTGCAAAATTCCAAGTACATTTATATTGAGCATGGAAAGCCACTTCGTCACAACACCTAATTCCTCAACCTTTTCCACAGCTATGCTTCTGTTAGCAGTTTGTATCTTCATGGTCATATATATACTAAGAAAAAGGTCACACCACCTCCCACCTGGCCCAATGCAATGGCCTATTACCGGGAGCCTGCACGCATTGTTTACATGTAAGCCAGTGTTTCGATGGATTCACAGGCTTATGTGTAAGATGAATGCCGAAATCATTTGTATCCGCTTCCTGAACACCCATGTCATTGTTGTATCTAGTGATACTTTGGCAAAAGAGTTCTTGAAGACACAAGACACTGTGTTTTCGTCAAGACCTGTTTCTTTAGCTTCTGAAATAGCTAGTGGTGGATACCTAACAACTGCCTTTAGTCCCATGGGAGAGCAATGGAAAAAAATGAGGGGAACCCTTGCCACTGAAATCCTTTCCAAGAATATACACAAGTGGCTTACGAGCAAAAGAAACGAGGAGGCCGACCACTTAGTCCGCTATGTCCACAACCAAGTGAGCAGCAACTTGATAGGGGGGATTGTCAACGTGAGGGTCATTGCTCGACATTATTGTGGTAATTTGATGAGAAATTTGATATTTAGCAAACGATTCTTTGGATCTGGGATGCAAGATGGAGGACCAGGAGCTGAAGAAGAAGAGCATGTCAGCGCGCTTTTCAAAATCCTCGATTACACATTTTCCTTTTGTGTTTCTGACTACGTTGGGTTTTTACGTGGGCGGTTTGATTTAGATGGTCACGAAAATATCATTAGAATGGCAGTTGAAAGTGTGAGGAAGTATCAAGATCCTTTAATAGACGAGAGAGTTCAACAATGGGCAAAAGGTACCAAGACAGTGAAAGAAGACTTGCTTGATGTCATGCTCTCTCTCCAGAATGAAGACTTGGGCACGAAATTATTGTCTGTTGATGAGATCAAAGCCCAAATTATTGAAATGATGCTGGCATCAGTGGACAATCCATCAAATGCAGTTGAATGGGCACTTGCAGAAATGATAAATCAAACTGCAATACTTAAAAGGGCGGTAGAAGAATTGGATAGAGTTGTAGGGACACACAGGTTGGTCCAAGAATCAGATTTGCCAAAATTGAACTACATTAAGTCATGTGCAAGGGAGGCCTTTAGACTCCATCCCATTGGGCCTTTTAACATCCCGCATGTATCCATGTCTGATACGACAATTGCTGGCTACTTCATACCAAAGGGTAGCCATGTGCTTTTGAGCCGACCAGGTCTTGGACGCAACCCAAAAATATGGGACGATCCATTAACCTTTAATCCAGAGCGACACTTGAGTGACAATGGCACTGATGAAGTGGCACTGACAGAGTCAGAGCTTCGACTTTTGTCTTTTAGTAGTGGGCGAAGAGGATGTGTAGGAGTTCTACTAGGTTCGACAATGACAACAATGTTGTTAGCGAGGCTTCTTCAATGCTTCACCTGGAGTGCTTCACCTATTAAGCCACACATTGACCTCAGCGAGTCATATGAAAGTTTGGTTATGGCAAAACCTTTACATGCACTCGCTCGGCCGCGTTTGGGAGATAATTTGTATCCTAAATGTAAAATCCCTCCATGGACACCTAATAAGTCTGAAGAATGAAGAGTTATTATATGGAGTGTCTAA

Network for GWHGAAZE020615

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	54	525	4.50E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12153	CYP79A2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Cyanoamino acid metabolism	map00460
		Glucosinolate biosynthesis	map00966

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.320
	SRR3591707	mature leaf	0.149
	SRR3591708	Shoot apex	0.043
	SRR3591709	Stem	0.024
	SRR3591710	White floral bud	0.157
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.022
SRP173429	SRR8316895	Juvenile bud stage	0.427
	SRR8316896	Juvenile bud stage	0.426
	SRR8316897	Juvenile bud stage	0.009
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.509
	SRR8316898	Complete white stage	14.234
	SRR8316899	Complete white stage	1.177
	SRR8316903	Complete white stage	16.812
	SRR8316902	Silver flowering stage	7.824
	SRR8316904	Silver flowering stage	15.271
	SRR8316905	Silver flowering stage	8.944
	SRR8316906	Gold flowering stage	22.745
	SRR8316907	Gold flowering stage	26.027
	SRR8316908	Gold flowering stage	10.486
SRP132670	SRR6706286	Control	1.311
	SRR6706287	Light intensity 50%	2.697
	SRR6706288	Light intensity 20%	0.663
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.045
	CNS0095593	Slightly white alabastrum(diploid) 2	0.024
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.124
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.021
	CNS0095598	Silvery flower (diploied) 1	1.047
	CNS0095599	Silvery flower (diploied) 2	0.914
	CNS0095600	Silvery flower (diploied) 3	6.380
	CNS0095601	Golden flower (diploid) 1	2.638
	CNS0095602	Golden flower (diploid) 2	4.087
	CNS0095603	Golden flower (diploid) 3	3.148
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.068
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.056
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.881
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.097
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.120
	CNS0095610	Silvery flower (tetraploid) 1	11.136
	CNS0095611	Silvery flower (tetraploid) 2	8.453
	CNS0095612	Silvery flower (tetraploid) 3	68.986
	CNS0095613	Golden flower (tetraploid) 1	30.058
	CNS0095614	Golden flower (tetraploid) 2	13.091
	CNS0095615	Golden flower (tetraploid) 3	21.429
CRA001975	CRR073297	Stem 1	1.441
	CRR073298	Stem 2	1.223
	CRR073299	Stem 3	0.932
	CRR073300	Leaf 1	0.708
	CRR073301	Leaf 2	0.403
	CRR073302	Leaf 3	0.580
	CRR073303	Juvenile bud 1	2.889
	CRR073304	Juvenile bud 2	50.213
	CRR073305	Juvenile bud 3	0.738
	CRR073306	Third green 1	83.226
	CRR073307	Third green 2	107.796
	CRR073308	Third green 3	72.911
	CRR073309	Second white 1	18.040
	CRR073310	Second white 2	26.960
	CRR073311	Second white 3	33.462
	CRR073312	Silver flowering 1	16.639
	CRR073313	Silver flowering 2	9.131
	CRR073314	Silver flowering 3	11.929
	CRR073315	Gold flowering 1	16.699
	CRR073316	Gold flowering 2	12.661
	CRR073317	Gold flowering 3	11.565
	CRR073318	Tawny withering 1	0.201
	CRR073319	Tawny withering 2	0.798
	CRR073320	Tawny withering 3	1.184