Gene detail

Detail information of GWHGAAZE020585

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03457.1	2.1113E-129	unnamed protein product [Coffea canephora]
Swissprot	tr\|O22862\|PER26_ARATH	2E-117	Probable peroxidase 26 (Precursor)
trEMBL	tr\|A0A068U561\|A0A068U561_COFCA	8E-130	Coffea canephora DH200=94 genomic scaffold, scaffold_10 {ECO:0000313\|EMBL:CDP03457.1}
TAIR10	AT2G43480.1	8E-96	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	10875125	10878566	+
GWHAAZE00000006	mRNA	10875125	10878566	+
GWHAAZE00000006	exon	10875125	10875449	+
GWHAAZE00000006	exon	10876583	10876599	+
GWHAAZE00000006	exon	10876681	10876815	+
GWHAAZE00000006	exon	10877436	10877595	+
GWHAAZE00000006	exon	10878142	10878566	+
GWHAAZE00000006	CDS	10875125	10875449	+
GWHAAZE00000006	CDS	10876583	10876599	+
GWHAAZE00000006	CDS	10876681	10876815	+
GWHAAZE00000006	CDS	10877436	10877595	+
GWHAAZE00000006	CDS	10878142	10878566	+

Transcript Sequence
>GWHTAAZE020609 ATGGGGAGAGAAAATGGGCATTTTTTGTTTGTTTCTTTTGTGGTGATTGCACTTGCACTGGTGAGCTTTGACTATGTGAGTGTGCAGGCGGCGGAGACGCTGCCACCACCGGCAGCACCACGGCTGATCCGGCAATATTACAAGAAGACTAATACTTGTGAGAATGCAGAGAATTTTGTTAAGCACCAAGTAAAGATTTATTGGAGCGCAGATAAAAGCATTACTCCCAAGCTTGTGAAGTTGCTCTATGCTGATTGCATGCCCAATGTATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTATATTAATGATTTGGAGTCGGAGGGTTGTGATGGATCTATTCTCCTCGACGGTCCAAACACGGAGAAAACTGCACCACAAAATTCCGGGTTTGGAAAAGAAGTATTCGTCGTCATCGACAAAATCAAAACTGTCTTAGAAGATCGGTGCCCTGGTGCTGCTGGTGCACCATCTTATCCTGTTCTCTTGGGAAGAAGGGATGGATATGAATCAAAAGCATCATGGATAGACTTTCCATCACCGTCGATTTCATGGGAATCAGCACTCAAATATTTCCAATCCAAGGGTTTAGATGGGGAAGACATGGCTACACTCCTAGGAGCACACACAATGGGCAAAACGCATTGCAGTTACATACAAGACCGTTTATACAATTTCAACAAAACTGGAAAACCAGATCCCACGATGAAGAAATCTGTGTTTAATGACCTAACCAAACAATGCCCGAAGGGTTCGGAAAAACCAACGGTGGAGCTGAACCCAGACAATTCTGGTCCCAACTACAAGTTCACCAACTCTTATTACACTAGGGTTCTCGCCGAAAAATCGATCCTCGGAGTTGACCAACAGCTCAAATATGGCAATGAAACGTACCAATTAGTCGATGAGTACTCTCGCCTTTTTGAAAAATTTCGCAGGAGATTTGCATTATCAATTAACCGAATGGCAGCGTATAAAGTATTAACTGGAACTAAAGGAGAGATACGAAAGAAATGCTCGATTCGCAATAGTTTCAAGGCCTAA

Network for GWHGAAZE020585

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	60	312	3.00E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.313
	SRR3591706	second leaf	0.315
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.011
	SRR3591711	White flower	0.137
	SRR3591712	Green floral bud	0.260
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.380
	SRR8316896	Juvenile bud stage	0.451
	SRR8316897	Juvenile bud stage	0.262
	SRR8316894	Third green stage	0.522
	SRR8316900	Third green stage	1.886
	SRR8316901	Third green stage	1.394
	SRR8316898	Complete white stage	0.799
	SRR8316899	Complete white stage	2.164
	SRR8316903	Complete white stage	0.553
	SRR8316902	Silver flowering stage	0.134
	SRR8316904	Silver flowering stage	0.092
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.127
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.385
	SRR6706287	Light intensity 50%	0.692
	SRR6706288	Light intensity 20%	0.911
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.266
	CNS0095593	Slightly white alabastrum(diploid) 2	0.263
	CNS0095594	Slightly white alabastrum(diploid) 3	0.282
	CNS0095595	Whole white alabastrum(diploid) 2	0.803
	CNS0095596	Whole white alabastrum(diploid) 3	0.681
	CNS0095597	Whole white alabastrum(diploid) 4	0.611
	CNS0095598	Silvery flower (diploied) 1	0.358
	CNS0095599	Silvery flower (diploied) 2	0.134
	CNS0095600	Silvery flower (diploied) 3	0.583
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.050
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.701
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.512
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.860
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.629
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.786
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.220
	CNS0095610	Silvery flower (tetraploid) 1	0.232
	CNS0095611	Silvery flower (tetraploid) 2	0.129
	CNS0095612	Silvery flower (tetraploid) 3	0.064
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.012
	CNS0095615	Golden flower (tetraploid) 3	0.045
CRA001975	CRR073297	Stem 1	0.140
	CRR073298	Stem 2	0.204
	CRR073299	Stem 3	0.231
	CRR073300	Leaf 1	0.392
	CRR073301	Leaf 2	0.504
	CRR073302	Leaf 3	0.346
	CRR073303	Juvenile bud 1	1.051
	CRR073304	Juvenile bud 2	1.463
	CRR073305	Juvenile bud 3	0.385
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.172
	CRR073308	Third green 3	0.324
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000