Gene detail

Detail information of GWHGAAZE020581

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269633.2	0	PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 [Vitis vinifera]
COG	YP_943364.1	2E-38	3-beta hydroxysteroid dehydrogenase/isomerase
Swissprot	tr\|A9X4U2\|HSDD3_ARATH	0	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3
trEMBL	tr\|D7U1V9\|D7U1V9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36725.3}
TAIR10	AT2G43420.1	3E-158	3-beta hydroxysteroid dehydrogenase/isomerase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	10754046	10765059	+
GWHAAZE00000006	mRNA	10754046	10765059	+
GWHAAZE00000006	exon	10754046	10754288	+
GWHAAZE00000006	exon	10756770	10756815	+
GWHAAZE00000006	exon	10757536	10757625	+
GWHAAZE00000006	exon	10757720	10757853	+
GWHAAZE00000006	exon	10758162	10758332	+
GWHAAZE00000006	exon	10758727	10758843	+
GWHAAZE00000006	exon	10758947	10759026	+
GWHAAZE00000006	exon	10759145	10759343	+
GWHAAZE00000006	exon	10760204	10760321	+
GWHAAZE00000006	exon	10761487	10761661	+
GWHAAZE00000006	exon	10762861	10763017	+
GWHAAZE00000006	exon	10764413	10764479	+
GWHAAZE00000006	exon	10764878	10765059	+
GWHAAZE00000006	CDS	10754046	10754288	+
GWHAAZE00000006	CDS	10756770	10756815	+
GWHAAZE00000006	CDS	10757536	10757625	+
GWHAAZE00000006	CDS	10757720	10757853	+
GWHAAZE00000006	CDS	10758162	10758332	+
GWHAAZE00000006	CDS	10758727	10758843	+
GWHAAZE00000006	CDS	10758947	10759026	+
GWHAAZE00000006	CDS	10759145	10759343	+
GWHAAZE00000006	CDS	10760204	10760321	+
GWHAAZE00000006	CDS	10761487	10761661	+
GWHAAZE00000006	CDS	10762861	10763017	+
GWHAAZE00000006	CDS	10764413	10764479	+
GWHAAZE00000006	CDS	10764878	10765059	+

Transcript Sequence
>GWHTAAZE020605 ATGATGATAGGAGATCACCATAATCATCAGTTGAGAACCTGCGTGGTGATAGGTGGACGAGGATTCATCGGCAGATCTCTGGTCCATAGGCTCTTGAAACTCGAGCATTGGATCGTTCGAATCGCCGATTCTCCCAAAGTTCTTCAGCTCGATCCCTCAGAACGAGGCTCTCTTCTCTCCGAAGCTCTCTCCACTGGCCGTGCTTCTTATCTCCATGTCGATCTTCGCAATAAAACCACAATCTTGTGCATTTTTGTTACTCTTAGCTTCCAGCTCTATGAGCTCTTTGCTATTGAAGGTTCATCTGTTGTATTCTACATGGACACTATTGATTCATGTAGGCATGATTTCTATATTTCCTACACAATCATCGTTCAAGGTGCAAAAAATGTCATAAATGCTTGCAGAGAATGCAATGTTAAAAGGCTAATATATAACAGCACTGCTGATGTAGTTTTTGACGGTTCACATGATATAAATAGCGGAGATGAATCACTACCATACGCTTGGAAATTTGAGAACCCATGGAGTGACCTTAAGGCTCAGGCTGAGGCACTGGTCTTGTTTGCTAACGATGTTGATGGCCTTCTAACATGTGCTCTTCGGCCTAATAATGTCTTCGGACCTGGTGATAAGCAGCTCGTGCCATTTCTAGTGGATATAGCAAAATCTGGCTTGCGAAAGTTTATTATAGGAAGTGGTGAAAATATGTCCGACTTCACCTACGTGGAGAATGTTGCCCATGCCTTTATATGTGCTGAAGAAGCTCTAGGTTCTCGAATGGTGTCTGTGTCTGGAAAGGCGTTCTTCATCACTAATGTTGAGCCAATGAAGTTATGGGAATTTTTCTCTCTCATATTGGAGGGCTTGGGTTATCAAAGACCGATTATCAAACTTCCTACTAGGGTTTTTTGGTATATTGTTTTGCTTGTCAAATGGATGGACTCAAAGATGGGTTCCACAAAGCTTGACAACTCAGTGCCAATTCACAACATTGTTCAACTGGCCTCATGCTCTCGAACATTCAACTGCTCTGCAGCTCAGAAGCATATTGGTTACTCACCAATTGTTTCACTGGAAGAAGGTATTGCTTTAACGGTCAGATCATTCTCTCATTTAGCCAAAGCCTCTTCTTTTGCGAGACACAAAGACCCTGATGCATCATCAAAAGTGGACAAGCTGCTAGGCAGTGGGAAAGTTGCAGACATTTTGCTATGGAGGGATGAGAAGATATCATTTACATCGTTTCTTGCGCTGGTTCTGCTGTATTATTGGTTTTTCCTCTGTGGAAGAACTTTTATCTCATCTACTGCTAGGCTCTTGCTGCTTGTCACTCTTATCCTCTTTGGATATGGAAGACTACCTTCAAATGTATTTGGTTTTTCAATTCCAAGGATACCCTTGGATTGTTTCGAGATCTCCGAAATGGATATGCAAAGTTGTGCCACAATTATTGCAAACATATTGAATATGGCTAGTAGTGTAACAAGATCATTGGCCCAAGGAGAGGACTGGGTTATGTTCTTCAAGGTGGCTGTTTCACTATATCTTTTCAAGGTGATGGTAGCACGTTCGTTAACGTTGTGGATTGGTGTAGCTTTGGTGCTTGCTTTCACTTCATTCTTTGTTTACGAGCAATACGAGGAGGAAATCGATGGAGTAGCAAAGGACTTGTTCTACTGCACAAGAAGAGTCGCTGGTTTGTTGACAAGGAATGTACCGGTGTATGTTACCTCTTTACTTCCTAACTCAATATCCCAAAAAGAGAGAGCGAGATAG

Network for GWHGAAZE020581

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01073.20	3Beta_HSD	15	300	1.30E-68
PF02453.18	Reticulon	400	556	3.40E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K23558	3BETAHSDD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name
GO:0006694	biological_process	steroid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0003854	molecular_function	3-beta-hydroxy-delta5-steroid dehydrogenase activity
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.631
	SRR3591706	second leaf	8.528
	SRR3591707	mature leaf	8.156
	SRR3591708	Shoot apex	8.472
	SRR3591709	Stem	29.695
	SRR3591710	White floral bud	10.374
	SRR3591711	White flower	2.944
	SRR3591712	Green floral bud	12.980
	SRR3591713	Yellow flower	1.135
SRP173429	SRR8316895	Juvenile bud stage	7.549
	SRR8316896	Juvenile bud stage	11.086
	SRR8316897	Juvenile bud stage	5.042
	SRR8316894	Third green stage	4.547
	SRR8316900	Third green stage	19.036
	SRR8316901	Third green stage	14.432
	SRR8316898	Complete white stage	7.974
	SRR8316899	Complete white stage	13.752
	SRR8316903	Complete white stage	16.012
	SRR8316902	Silver flowering stage	1.492
	SRR8316904	Silver flowering stage	2.758
	SRR8316905	Silver flowering stage	0.375
	SRR8316906	Gold flowering stage	1.300
	SRR8316907	Gold flowering stage	2.427
	SRR8316908	Gold flowering stage	2.070
SRP132670	SRR6706286	Control	5.684
	SRR6706287	Light intensity 50%	6.207
	SRR6706288	Light intensity 20%	7.302
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.665
	CNS0095593	Slightly white alabastrum(diploid) 2	9.132
	CNS0095594	Slightly white alabastrum(diploid) 3	8.272
	CNS0095595	Whole white alabastrum(diploid) 2	7.127
	CNS0095596	Whole white alabastrum(diploid) 3	8.365
	CNS0095597	Whole white alabastrum(diploid) 4	5.972
	CNS0095598	Silvery flower (diploied) 1	1.114
	CNS0095599	Silvery flower (diploied) 2	2.395
	CNS0095600	Silvery flower (diploied) 3	5.123
	CNS0095601	Golden flower (diploid) 1	1.232
	CNS0095602	Golden flower (diploid) 2	2.150
	CNS0095603	Golden flower (diploid) 3	2.049
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.800
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.060
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.519
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.706
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.226
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.066
	CNS0095610	Silvery flower (tetraploid) 1	3.482
	CNS0095611	Silvery flower (tetraploid) 2	1.390
	CNS0095612	Silvery flower (tetraploid) 3	1.974
	CNS0095613	Golden flower (tetraploid) 1	0.631
	CNS0095614	Golden flower (tetraploid) 2	2.591
	CNS0095615	Golden flower (tetraploid) 3	0.872
CRA001975	CRR073297	Stem 1	6.563
	CRR073298	Stem 2	6.024
	CRR073299	Stem 3	4.985
	CRR073300	Leaf 1	10.565
	CRR073301	Leaf 2	6.651
	CRR073302	Leaf 3	8.148
	CRR073303	Juvenile bud 1	8.794
	CRR073304	Juvenile bud 2	6.940
	CRR073305	Juvenile bud 3	10.164
	CRR073306	Third green 1	2.032
	CRR073307	Third green 2	3.778
	CRR073308	Third green 3	3.761
	CRR073309	Second white 1	0.898
	CRR073310	Second white 2	0.615
	CRR073311	Second white 3	0.957
	CRR073312	Silver flowering 1	1.211
	CRR073313	Silver flowering 2	0.528
	CRR073314	Silver flowering 3	0.736
	CRR073315	Gold flowering 1	3.026
	CRR073316	Gold flowering 2	3.526
	CRR073317	Gold flowering 3	2.488
	CRR073318	Tawny withering 1	8.060
	CRR073319	Tawny withering 2	3.167
	CRR073320	Tawny withering 3	6.258