Gene detail

Detail information of GWHGAAZE020580

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011073846.1	0	PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Sesamum indicum]
COG	YP_001412854.1	3E-82	hydroxyacylglutathione hydrolase
Swissprot	tr\|O24495\|GLO2M_ARATH	1E-164	Hydroxyacylglutathione hydrolase 1, mitochondrial (Precursor)
trEMBL	tr\|A0A022RQ76\|A0A022RQ76_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU41075.1}
TAIR10	AT1G06130.2	5E-126	glyoxalase 2-4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	10732181	10745632	+
GWHAAZE00000006	mRNA	10732181	10745632	+
GWHAAZE00000006	exon	10732181	10732252	+
GWHAAZE00000006	exon	10733192	10733374	+
GWHAAZE00000006	exon	10733917	10734120	+
GWHAAZE00000006	exon	10736728	10736817	+
GWHAAZE00000006	exon	10741093	10741216	+
GWHAAZE00000006	exon	10741461	10741561	+
GWHAAZE00000006	exon	10742943	10743017	+
GWHAAZE00000006	exon	10743123	10743221	+
GWHAAZE00000006	exon	10745486	10745632	+
GWHAAZE00000006	CDS	10732181	10732252	+
GWHAAZE00000006	CDS	10733192	10733374	+
GWHAAZE00000006	CDS	10733917	10734120	+
GWHAAZE00000006	CDS	10736728	10736817	+
GWHAAZE00000006	CDS	10741093	10741216	+
GWHAAZE00000006	CDS	10741461	10741561	+
GWHAAZE00000006	CDS	10742943	10743017	+
GWHAAZE00000006	CDS	10743123	10743221	+
GWHAAZE00000006	CDS	10745486	10745632	+

Transcript Sequence
>GWHTAAZE020604 ATGTTGATGCAGATGATCTGTAGAGCAGCAAAACCACCTTCTTCTGCCATGGCTTCCTTCCCTCGTTCTAGGGCGAGGACACAGCTTTGTGTATTGCCGGGCACAAGACAACTCTGTCTTAGAAAAAATCTCTTATATGGATTTGTGAACCTCGTCTCAATACCGTTCAAAACCTTGCGGGGAATCAGTCGATCACTTGGAGTTTCTCATTTGTGTAGCATAACCAATATGTCCTCCTCGTTGCAAGTTGAATTGGTGCCATGTCTCAAGGACAACTATGCATATCTTTTGCATGATGTAGATACTGGTACTGTTGGGGTAGTTGATCCTTCTGAAGCTGTACCTGTTATAGACGCCTTGAGTAAGAAAAATCGAAATTTGACCTACATATTGAATACGCATCACCATTTTGATCATACTGGTGGAAACATGGAGTTAAAAGAAAGGTATGGTGCAAAGGCAGACTTGAGCATGAAGCTGGATGTTCAGCCCCACGATCCAATTCCTGGCCCCAAGATAAATCAATCAACTTCTCTAATAGGATTAATGGTAATTGGATCAGGAGTAGACAAGGACAGAATTCCTGGCATTGATATAGTCTTAAATGATGGAGACAAATGGATGTTCGCAGGCCATGAGGTGACTGTGATTGAAACTCCTGGTCATACTAAAGGCCACATTAGCTTCTACTTTCCGGGATCAGGGTCAATTTTTACGGGAGACACTTTATTCAGCTTATCATGTGGCAAGCTTTTTGAAGGAACGCCTGAGCAGATGCATTCATCCCTTGCAAAGATAAGCGCATTGCCAGATGATACAATTATTTACTGCGGTCATGAATATACATTGAGTAACGCAAAGTTTGCACTGTCTATAGAACCGGGGAATAAAGCACTTCAGTCCTATGCTGACCAAATTACCCATCTTCGCAACAAGGGCCTGCCAACAATTCCGAGCACCCTAAAGAAGGAGAAGGCATGCAATCCGTTCCTCCGCACTTCAAGTAGAGAAATCCGGCAAACATTAAACATTGCAGATACTGCAACTGATGCAGAAGCATTAGGTACAATCCGCCGAGCGAAGGATAACTTCTAG

Network for GWHGAAZE020580

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00753.28	Lactamase_B	94	279	3.10E-21
PF16123.6	HAGH_C	280	364	2.80E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01069	gloB, gloC, HAGH	Metabolic pathways	map01100
K01069	gloB, gloC, HAGH	Pyruvate metabolism	map00620

Gene Ontology

GO term	Ontology	Name
GO:0019243	biological_process	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
GO:0004416	molecular_function	hydroxyacylglutathione hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	71.988
	SRR3591706	second leaf	74.837
	SRR3591707	mature leaf	81.002
	SRR3591708	Shoot apex	52.676
	SRR3591709	Stem	136.566
	SRR3591710	White floral bud	70.389
	SRR3591711	White flower	77.610
	SRR3591712	Green floral bud	75.609
	SRR3591713	Yellow flower	64.410
SRP173429	SRR8316895	Juvenile bud stage	59.310
	SRR8316896	Juvenile bud stage	67.458
	SRR8316897	Juvenile bud stage	26.004
	SRR8316894	Third green stage	25.739
	SRR8316900	Third green stage	81.067
	SRR8316901	Third green stage	85.082
	SRR8316898	Complete white stage	47.467
	SRR8316899	Complete white stage	117.907
	SRR8316903	Complete white stage	52.755
	SRR8316902	Silver flowering stage	31.672
	SRR8316904	Silver flowering stage	40.079
	SRR8316905	Silver flowering stage	20.660
	SRR8316906	Gold flowering stage	70.103
	SRR8316907	Gold flowering stage	64.052
	SRR8316908	Gold flowering stage	66.984
SRP132670	SRR6706286	Control	60.773
	SRR6706287	Light intensity 50%	67.230
	SRR6706288	Light intensity 20%	76.380
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.138
	CNS0095593	Slightly white alabastrum(diploid) 2	59.003
	CNS0095594	Slightly white alabastrum(diploid) 3	50.651
	CNS0095595	Whole white alabastrum(diploid) 2	52.910
	CNS0095596	Whole white alabastrum(diploid) 3	53.105
	CNS0095597	Whole white alabastrum(diploid) 4	53.764
	CNS0095598	Silvery flower (diploied) 1	51.541
	CNS0095599	Silvery flower (diploied) 2	58.165
	CNS0095600	Silvery flower (diploied) 3	81.532
	CNS0095601	Golden flower (diploid) 1	53.419
	CNS0095602	Golden flower (diploid) 2	70.440
	CNS0095603	Golden flower (diploid) 3	68.074
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.620
	CNS0095605	Slightly white alabastrum(tetraploid) 2	48.439
	CNS0095606	Slightly white alabastrum(tetraploid) 3	72.955
	CNS0095607	Whole white alabastrum(tetraploid) 1	42.242
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.501
	CNS0095609	Whole white alabastrum(tetraploid) 3	74.577
	CNS0095610	Silvery flower (tetraploid) 1	91.917
	CNS0095611	Silvery flower (tetraploid) 2	102.462
	CNS0095612	Silvery flower (tetraploid) 3	95.233
	CNS0095613	Golden flower (tetraploid) 1	57.092
	CNS0095614	Golden flower (tetraploid) 2	71.378
	CNS0095615	Golden flower (tetraploid) 3	66.395
CRA001975	CRR073297	Stem 1	52.925
	CRR073298	Stem 2	43.354
	CRR073299	Stem 3	42.779
	CRR073300	Leaf 1	37.531
	CRR073301	Leaf 2	41.432
	CRR073302	Leaf 3	36.857
	CRR073303	Juvenile bud 1	43.811
	CRR073304	Juvenile bud 2	41.083
	CRR073305	Juvenile bud 3	40.061
	CRR073306	Third green 1	19.315
	CRR073307	Third green 2	17.930
	CRR073308	Third green 3	18.587
	CRR073309	Second white 1	28.600
	CRR073310	Second white 2	34.580
	CRR073311	Second white 3	18.314
	CRR073312	Silver flowering 1	13.005
	CRR073313	Silver flowering 2	14.889
	CRR073314	Silver flowering 3	10.257
	CRR073315	Gold flowering 1	68.805
	CRR073316	Gold flowering 2	84.786
	CRR073317	Gold flowering 3	44.887
	CRR073318	Tawny withering 1	31.561
	CRR073319	Tawny withering 2	40.470
	CRR073320	Tawny withering 3	35.592