Gene detail

Detail information of GWHGAAZE020528

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002317586.2	5.4688E-129	DNA-directed DNA polymerase family protein [Populus trichocarpa]
COG	YP_004987106.1	6E-34	DNA polymerase I (POL I)
Swissprot	tr\|F4I6M1\|POLIA_ARATH	2E-119	DNA polymerase I A, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|B9I0C7\|B9I0C7_POPTR	2E-129	DNA-directed DNA polymerase family protein {ECO:0000313\|EMBL:EEE98198.2}
TAIR10	AT1G50840.1	7E-103	polymerase gamma 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	7885188	7892318	-
GWHAAZE00000006	mRNA	7885188	7892318	-
GWHAAZE00000006	exon	7892208	7892318	-
GWHAAZE00000006	exon	7891613	7891807	-
GWHAAZE00000006	exon	7888800	7888892	-
GWHAAZE00000006	exon	7888492	7888704	-
GWHAAZE00000006	exon	7887777	7887866	-
GWHAAZE00000006	exon	7885188	7885331	-
GWHAAZE00000006	CDS	7892208	7892318	-
GWHAAZE00000006	CDS	7891613	7891807	-
GWHAAZE00000006	CDS	7888800	7888892	-
GWHAAZE00000006	CDS	7888492	7888704	-
GWHAAZE00000006	CDS	7887777	7887866	-
GWHAAZE00000006	CDS	7885188	7885331	-

Transcript Sequence
>GWHTAAZE020552 ATGTTTTGTGTAAATCAGAACCAGCCTTCTTTAGAGAAGGACAGATTCAAGATCCGCCAGGCATTTATGGCTGCACCAGGGAACTCTTTCATTGTTGCTGATTATGGGCAGATGGAACTTAGGATTATTGCACATCTTTCAAACTGTCGAAGCATGTTGGATGCCTTCAATGCTGGTGTAGACTTTCATTCCAATACTACAATGGACTTGTACCCACACATTCGTGATGCCGTTGAACAAAAGCGTGTACTTCTTGAGTGGCATCCATCACCTGGTGAAGACAAGCCTCCGGTTCCTCTAGTAAAGGATTTGTTTGCTTCTGAATGGAAGAAATCAAAGATGCTAAACGTTGCTATCCCGTATGGGATAAGCATATCAAGGCTTGCACGGGAGTTGAAGGTTTCTGTAATGGAAGCAAAGCGAACAGTTGCCTGCTGGTACAGTGAAAGAGAAGAAGTTCGGCATTGGCGGTACAATTGTGAACAAGAAGTTAGCGTAAATAATAGGGTTCACACATTGCTAGGACGGACCTGCTTGTTTCCTCCGATACATAATCCTACTCGAGCTCAAAAGGCTCATATTGCACGAGCTGCTATCAGTGGCACCGTACAGGGTAGTGCTGCTGATATTGGAATGTGCGCCTTGTTAGAAATATCAGAGAATGCTCGTTTGAAGGAACTCGGGTGGAGATTGCTTTTACAGGTTTATGATGAAGTGATATTAGAAGGACCAACGAAGTCGGCTGCAGTTGCAAAGGCCATTGTGTTGGATTGTATGTCAAAACCCTTTGATGGAGAGAATATTCTTAGAGTCGGCTTAGCTGTTGATGCTGAATGCGCTGAAAAC

Network for GWHGAAZE020528

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00476.21	DNA_pol_A	6	78	2.30E-15
PF00476.21	DNA_pol_A	110	282	5.20E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02335	polA	DNA replication	map03030
		Base excision repair	map03410
		Nucleotide excision repair	map03420
		Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0006261	biological_process	DNA-dependent DNA replication
GO:0003677	molecular_function	DNA binding
GO:0003887	molecular_function	DNA-directed DNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.073
	SRR3591706	second leaf	0.325
	SRR3591707	mature leaf	0.450
	SRR3591708	Shoot apex	7.427
	SRR3591709	Stem	1.399
	SRR3591710	White floral bud	0.887
	SRR3591711	White flower	0.550
	SRR3591712	Green floral bud	3.242
	SRR3591713	Yellow flower	0.052
SRP173429	SRR8316895	Juvenile bud stage	1.413
	SRR8316896	Juvenile bud stage	1.251
	SRR8316897	Juvenile bud stage	0.783
	SRR8316894	Third green stage	0.751
	SRR8316900	Third green stage	1.724
	SRR8316901	Third green stage	1.444
	SRR8316898	Complete white stage	0.101
	SRR8316899	Complete white stage	0.767
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.041
	SRR8316905	Silver flowering stage	0.040
	SRR8316906	Gold flowering stage	0.237
	SRR8316907	Gold flowering stage	0.083
	SRR8316908	Gold flowering stage	0.153
SRP132670	SRR6706286	Control	1.173
	SRR6706287	Light intensity 50%	1.813
	SRR6706288	Light intensity 20%	1.239
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.966
	CNS0095593	Slightly white alabastrum(diploid) 2	2.204
	CNS0095594	Slightly white alabastrum(diploid) 3	2.969
	CNS0095595	Whole white alabastrum(diploid) 2	1.844
	CNS0095596	Whole white alabastrum(diploid) 3	1.981
	CNS0095597	Whole white alabastrum(diploid) 4	1.527
	CNS0095598	Silvery flower (diploied) 1	0.061
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.146
	CNS0095601	Golden flower (diploid) 1	0.518
	CNS0095602	Golden flower (diploid) 2	0.134
	CNS0095603	Golden flower (diploid) 3	0.177
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.672
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.293
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.048
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.691
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.488
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.389
	CNS0095610	Silvery flower (tetraploid) 1	0.264
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.084
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	4.353
	CRR073298	Stem 2	2.881
	CRR073299	Stem 3	2.038
	CRR073300	Leaf 1	2.050
	CRR073301	Leaf 2	1.748
	CRR073302	Leaf 3	0.312
	CRR073303	Juvenile bud 1	1.283
	CRR073304	Juvenile bud 2	1.353
	CRR073305	Juvenile bud 3	1.142
	CRR073306	Third green 1	0.041
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.052
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.078
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.190
	CRR073316	Gold flowering 2	0.142
	CRR073317	Gold flowering 3	0.100
	CRR073318	Tawny withering 1	1.677
	CRR073319	Tawny withering 2	0.802
	CRR073320	Tawny withering 3	1.202