Gene detail

Detail information of GWHGAAZE020518

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFO84072.1	3.70695E-84	alpha-amylase [Actinidia chinensis]
Swissprot	tr\|Q94A41\|AMY3_ARATH	2E-65	Alpha-amylase 3, chloroplastic (Precursor)
trEMBL	tr\|S4SKP2\|S4SKP2_ACTCH	1E-84	Alpha-amylase {ECO:0000256\|RuleBase:RU361134}
TAIR10	AT1G69830.1	2E-55	alpha-amylase-like 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	7470853	7473334	-
GWHAAZE00000006	mRNA	7470853	7473334	-
GWHAAZE00000006	exon	7470853	7471287	-
GWHAAZE00000006	exon	7471708	7471982	-
GWHAAZE00000006	exon	7473063	7473108	-
GWHAAZE00000006	exon	7473266	7473334	-
GWHAAZE00000006	CDS	7473266	7473334	-
GWHAAZE00000006	CDS	7473063	7473108	-
GWHAAZE00000006	CDS	7471708	7471982	-
GWHAAZE00000006	CDS	7470853	7471287	-

Transcript Sequence
>GWHTAAZE020542 ATGCTCCACAAAGTGAGGATTGACTTTAACACTAATAGTTCAATTGCAGCTATAAACTTTGTATTGAAGGATGAGGGAACTAGAGCTTGGTATCAGAACAAGGGTAGACTTCAAGGAGAACCTAATCAGCAAAAGAGGCTCCTCAATGGCTTCCATGAAGAGCTTTCTATCGTAAAAGAAACTATTTTTGATAACTCTCTGAGTATTTCTGTCAAAAGATGCCCAGATACAGCAAACAATCTTTTGTACATAGAAACTGATCTACCTGGAGATAATGTTGTGCACTGGGGAGTTTGCAAAGATGAGGGTAAAAAATGGGAAATCCCAGCCGAGCCATATCCAGCTGAAACACTAGTTTTCAAGGACCAGGCTTTGCGCACTTTGTTGCAGGTTTTGAGCAAGTATGATTTATGGCTATATCTTCGTACTCATCCATTGGTTGCTTGTGCACTTGCATTGCAGCGAAAAGAGGGTGGAGATGGCGCTAGTGGATTATTTACTTTAAGTGAAGAATTTGTAGGATTTCTTTTTGTGCTGATGCTAAATGAAAGCACTTGGTTAAATTGTATGGGAAATGACTTTTACATACCCCTTTCAAACTCAAATGGCTTGGGAACTCCAACTATACAACTTCAATATGAAGAACAGGAACAAAAGGATTCTTCTGAAAGTGTGGAATCAGATTCTTCATGCACTGATGGAATTATCGGTGAAATCAGGGATTTAGTTAGTGACATTTCCTCCAAAAAAAGTCAAACAGTGAAGAGCAAAGAAGCACAAGAAATCATCCTTCAAGAAATCGAAAAGCTGGCGGCAGAGGCCTAA

Network for GWHGAAZE020518

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01176	AMY, amyA, malS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Pancreatic secretion	map04972
		Carbohydrate digestion and absorption	map04973

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.272
	SRR3591706	second leaf	0.498
	SRR3591707	mature leaf	0.517
	SRR3591708	Shoot apex	0.477
	SRR3591709	Stem	0.168
	SRR3591710	White floral bud	0.475
	SRR3591711	White flower	1.757
	SRR3591712	Green floral bud	0.449
	SRR3591713	Yellow flower	2.059
SRP173429	SRR8316895	Juvenile bud stage	0.105
	SRR8316896	Juvenile bud stage	0.277
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.050
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.111
	SRR8316898	Complete white stage	0.084
	SRR8316899	Complete white stage	0.418
	SRR8316903	Complete white stage	0.434
	SRR8316902	Silver flowering stage	0.044
	SRR8316904	Silver flowering stage	0.161
	SRR8316905	Silver flowering stage	0.165
	SRR8316906	Gold flowering stage	0.704
	SRR8316907	Gold flowering stage	0.801
	SRR8316908	Gold flowering stage	0.736
SRP132670	SRR6706286	Control	0.006
	SRR6706287	Light intensity 50%	0.030
	SRR6706288	Light intensity 20%	0.016
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.077
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.051
	CNS0095597	Whole white alabastrum(diploid) 4	0.121
	CNS0095598	Silvery flower (diploied) 1	0.045
	CNS0095599	Silvery flower (diploied) 2	0.051
	CNS0095600	Silvery flower (diploied) 3	0.131
	CNS0095601	Golden flower (diploid) 1	0.178
	CNS0095602	Golden flower (diploid) 2	0.834
	CNS0095603	Golden flower (diploid) 3	0.191
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.624
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.292
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.165
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.613
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.477
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.488
	CNS0095610	Silvery flower (tetraploid) 1	0.300
	CNS0095611	Silvery flower (tetraploid) 2	0.282
	CNS0095612	Silvery flower (tetraploid) 3	0.082
	CNS0095613	Golden flower (tetraploid) 1	0.251
	CNS0095614	Golden flower (tetraploid) 2	0.492
	CNS0095615	Golden flower (tetraploid) 3	0.349
CRA001975	CRR073297	Stem 1	0.083
	CRR073298	Stem 2	0.156
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.284
	CRR073301	Leaf 2	0.314
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.053
	CRR073304	Juvenile bud 2	0.090
	CRR073305	Juvenile bud 3	0.110
	CRR073306	Third green 1	0.115
	CRR073307	Third green 2	0.090
	CRR073308	Third green 3	0.097
	CRR073309	Second white 1	0.016
	CRR073310	Second white 2	0.214
	CRR073311	Second white 3	0.209
	CRR073312	Silver flowering 1	0.067
	CRR073313	Silver flowering 2	0.063
	CRR073314	Silver flowering 3	0.182
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.255
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.015
	CRR073319	Tawny withering 2	0.011
	CRR073320	Tawny withering 3	0.000