Gene detail

Detail information of GWHGAAZE020481

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002268942.2	0	PREDICTED: 2-isopropylmalate synthase A-like [Vitis vinifera]
COG	YP_004172963.1	2E-155	2-isopropylmalate synthase
Swissprot	tr\|O04973\|LEU1A_SOLPN	0	2-isopropylmalate synthase A
trEMBL	tr\|K4C627\|K4C627_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g053400.2.1}
TAIR10	AT1G74040.1	4E-179	2-isopropylmalate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	6306336	6316805	+
GWHAAZE00000006	mRNA	6306336	6316805	+
GWHAAZE00000006	exon	6306336	6307018	+
GWHAAZE00000006	exon	6309047	6309260	+
GWHAAZE00000006	exon	6309344	6309424	+
GWHAAZE00000006	exon	6309799	6309891	+
GWHAAZE00000006	exon	6309982	6310068	+
GWHAAZE00000006	exon	6310975	6311075	+
GWHAAZE00000006	exon	6316676	6316805	+
GWHAAZE00000006	CDS	6306336	6307018	+
GWHAAZE00000006	CDS	6309047	6309260	+
GWHAAZE00000006	CDS	6309344	6309424	+
GWHAAZE00000006	CDS	6309799	6309891	+
GWHAAZE00000006	CDS	6309982	6310068	+
GWHAAZE00000006	CDS	6310975	6311075	+
GWHAAZE00000006	CDS	6316676	6316805	+

Transcript Sequence
>GWHTAAZE020503 ACTTTCTCTTCAAACCTTTTACAGTACTACTTTCTTTTTCTTACTTTCGTCTCTCCCATCTCTCCAATGACGTCTCTGTTATCTCGCCCTTATTTCACCACTGCCTGTGCCAACGACTATAAAATTCGCTCTCTATCCATTTCAAAGCCGAGAATCCTCCGCTACTCCGTGTCCTCCTCTATTCGCTCCCGCCCCGAATACATCCCTCACAGGATCCCGGACCCTCACTACGTGCGCATATTCTACACCACCCTACGTGATGGAGAGCAATCACCAGGGGCCACCATGACAGAGAAGGAAAAATTGGAGATTGCGAAGCAACTCGCCAAACTAGGCGTGGACGTGATAGAGGCGGGGTTTCCGGCCTCATCGGCTGCTGACCTGGAGGCTGTGAAAATGATAGCGAGAGAGGTAGGGAATGCAAGTGACCTGGAGGATGGGCACGTGCCGGTGATATGCGGGCTGGCGAGGTGTAATGCAAAGGATATTGAGGCTGCATGGGAAGGGGTGAAGGAAGCGAAAAAAGGGAGGATACATACTTTTATAGCGACGAGTGAGATTCACATGAAGTATAAGTTGAAGAAAAGCAAGGAGGAGGTGGTGGAGATAGCGAGGAGAATGGTGGCATATGCGCGGAGTTTGGGTTGCGATGATGTTGAGTTTAGCCCTGAAGATGCCGGAAGATCTGAAAGGGAATTTCTATATGAGATTCTGGGGGAAGTTATCAAAGCTGGCGCGACAACCCTTAACATCCCTGATACTGTTGGCTACAATATGCCTAATGAATTTGGACAATTGATTGCTGATATAAAGGCCAATACTCCTGGAATTGAAAATGTCATCATTTCAACACACTGCCAGAATGATCTTGGACTTTCTACTGCCAACACTTTAGCAGGGGCTTGTGCTGGTGCAAGACAAGTAGAAGTAACAATCAATGGCATCGGTGAGAGAGCTGGTAATGCTTCTTTGGAAGAGGTAGTAATGGCACTCAAATGCCGCGGAGAGCAAGTGCTAGGTGGTCTTTACACCGGGATCAATACACAGCACATTGTCATGGCTAGCAAGATGGTGGAAGAGTACTCAGGGCTACGCGTGCAGCCCCACAAAGCTATAGTTGGAGCTAATGCTTTTGCTCATGAAAGTGGTATACATCAGGATGGAATGCTTAAACATAAAAATACGTACGAGATTATATCTCCTGAAGATATTGGGCTTCATCGCTCGAATGAATCTGGCATTGTCCTTGGAAAACTTAGTAGTGAGAGTTGGGTATCTGGTGGTGGTGGTGGCACCGAGGTTCGCTTGTTAGAGAGAAAAGGAGAAACAGGGTTGGGTTCAAGCCACGTGGTGGGTCTTGTTGTGGTGAGGGGCGGGGCTGGAATTTGA

Network for GWHGAAZE020481

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00682.20	HMGL-like	78	358	5.10E-94

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01649	leuA, IMS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Pyruvate metabolism	map00620
		Valine, leucine and isoleucine biosynthesis	map00290

Gene Ontology

GO term	Ontology	Name
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0046912	molecular_function	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.008
	SRR3591706	second leaf	16.203
	SRR3591707	mature leaf	33.847
	SRR3591708	Shoot apex	3.782
	SRR3591709	Stem	4.999
	SRR3591710	White floral bud	0.671
	SRR3591711	White flower	2.320
	SRR3591712	Green floral bud	0.408
	SRR3591713	Yellow flower	0.350
SRP173429	SRR8316895	Juvenile bud stage	1.086
	SRR8316896	Juvenile bud stage	1.600
	SRR8316897	Juvenile bud stage	0.789
	SRR8316894	Third green stage	0.622
	SRR8316900	Third green stage	1.346
	SRR8316901	Third green stage	1.674
	SRR8316898	Complete white stage	0.139
	SRR8316899	Complete white stage	1.137
	SRR8316903	Complete white stage	0.272
	SRR8316902	Silver flowering stage	0.179
	SRR8316904	Silver flowering stage	0.541
	SRR8316905	Silver flowering stage	0.175
	SRR8316906	Gold flowering stage	1.259
	SRR8316907	Gold flowering stage	0.769
	SRR8316908	Gold flowering stage	2.297
SRP132670	SRR6706286	Control	2.015
	SRR6706287	Light intensity 50%	1.559
	SRR6706288	Light intensity 20%	1.735
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.477
	CNS0095593	Slightly white alabastrum(diploid) 2	0.731
	CNS0095594	Slightly white alabastrum(diploid) 3	1.558
	CNS0095595	Whole white alabastrum(diploid) 2	2.229
	CNS0095596	Whole white alabastrum(diploid) 3	1.292
	CNS0095597	Whole white alabastrum(diploid) 4	1.323
	CNS0095598	Silvery flower (diploied) 1	3.651
	CNS0095599	Silvery flower (diploied) 2	1.790
	CNS0095600	Silvery flower (diploied) 3	0.870
	CNS0095601	Golden flower (diploid) 1	3.394
	CNS0095602	Golden flower (diploid) 2	1.519
	CNS0095603	Golden flower (diploid) 3	1.175
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.505
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.466
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.880
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.480
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.473
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.072
	CNS0095610	Silvery flower (tetraploid) 1	0.079
	CNS0095611	Silvery flower (tetraploid) 2	0.178
	CNS0095612	Silvery flower (tetraploid) 3	0.185
	CNS0095613	Golden flower (tetraploid) 1	0.348
	CNS0095614	Golden flower (tetraploid) 2	0.147
	CNS0095615	Golden flower (tetraploid) 3	0.010
CRA001975	CRR073297	Stem 1	3.456
	CRR073298	Stem 2	2.352
	CRR073299	Stem 3	1.795
	CRR073300	Leaf 1	1.817
	CRR073301	Leaf 2	2.264
	CRR073302	Leaf 3	0.787
	CRR073303	Juvenile bud 1	0.614
	CRR073304	Juvenile bud 2	0.148
	CRR073305	Juvenile bud 3	0.024
	CRR073306	Third green 1	0.041
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.200
	CRR073310	Second white 2	0.002
	CRR073311	Second white 3	0.288
	CRR073312	Silver flowering 1	0.032
	CRR073313	Silver flowering 2	0.433
	CRR073314	Silver flowering 3	0.113
	CRR073315	Gold flowering 1	3.878
	CRR073316	Gold flowering 2	6.463
	CRR073317	Gold flowering 3	2.371
	CRR073318	Tawny withering 1	0.627
	CRR073319	Tawny withering 2	0.975
	CRR073320	Tawny withering 3	1.154