Gene detail

Detail information of GWHGAAZE020455

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011073922.1	0	PREDICTED: calcium-dependent protein kinase 24-like [Sesamum indicum]
COG	YP_642814.1	9E-29	serine/threonine protein kinase
Swissprot	tr\|Q9SIQ7\|CDPKO_ARATH	0	Calcium-dependent protein kinase 24
trEMBL	tr\|A0A022R9N9\|A0A022R9N9_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU36734.1}
TAIR10	AT2G31500.1	9E-140	calcium-dependent protein kinase 24

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	5712435	5717651	+
GWHAAZE00000006	mRNA	5712435	5717651	+
GWHAAZE00000006	exon	5712435	5712947	+
GWHAAZE00000006	exon	5714035	5714107	+
GWHAAZE00000006	exon	5714622	5714765	+
GWHAAZE00000006	exon	5715053	5715198	+
GWHAAZE00000006	exon	5716096	5716263	+
GWHAAZE00000006	exon	5716876	5717046	+
GWHAAZE00000006	exon	5717505	5717651	+
GWHAAZE00000006	CDS	5712435	5712947	+
GWHAAZE00000006	CDS	5714035	5714107	+
GWHAAZE00000006	CDS	5714622	5714765	+
GWHAAZE00000006	CDS	5715053	5715198	+
GWHAAZE00000006	CDS	5716096	5716263	+
GWHAAZE00000006	CDS	5716876	5717046	+
GWHAAZE00000006	CDS	5717505	5717651	+

Transcript Sequence
>GWHTAAZE020477 ATGGGGACTTGCATGTCTGTTAATGGCAATGCAAACTTCCTCAAGAAAACCAAGCACATCAAGCCGGTTGCGGTCGACAGCCCCTGTGCTGGCGGCAGCACCACCCCCCGGTACCTCCGGCCGGTTACCGTCATAAAGGAAACCACCGGCGATGATGACGTCCAGTCCCGGTACGAGTTCGGCCGGGAACTAGGGCGGGGTGAGTTTGGGGTGACCTACGAGTGCACGGATAATGATACCGGCAAGAAGGTGGCTTGTAAGACGATATCGAAGAGCCGTTTACGGACCGAAATAGACGTGGAGGATGTGAGGAGAGAGGTGGAGATAATGAAGAGATTGCCTTCTCATCCAAATATTGTGAAGTACAAGGCTGTTTTTGAGGATAAGGAGGCAATATATTTGGTAATGGAGCTTTGTGAAGGTGGGGAGTTGTTTGATAGGATTATTGCCAAGGGGCATTATACTGAAAGGGCTGCTGCTCTTGTTACCAAGACCATGGTTGAGGTTGTCCAGGTGTGCCATGAAAATGGAGTGATACATAGAGACCTAAAACCTGAAAATTTCTTGTATGCAAATTCTTCAGAAAGTCAAAGATTTGGGGAAATAGTAGGAAGCCCATATTACATGGCCCCAGAGGTGCTGAGACGTAATTATGGAGAAGAAATTGATGTTTGGAGTGCAGGTGTTATTCTTTACATCTTACTATGTGGTGTTCCTCCTTTTTGGGCAGAAACTGAAGAAGGAATAGCACAAGCAATAGTAAGGGGAGAAATAGATTTCAAGAGGGACCCATGGCCAATAATATCTGAAGGTGCTAAGGACCTTGTTAAGGGCATGCTTGAACCTAATCCTTACAACAGATTCACTGTTGAAGAAATGGTAGCAGAAAACTTGCCAGATGAGCAAGTAAATGTGATAAAACAAATGTTCCACATGATGGACAAGGACAAAAATGGAAACTTGTCATTTGAGGAGCTCAAAGATGGCCTAATCAACATTGGTCAACCTGTTGCTGATCCTGATGTAAAGATGTTAATAGAAGCAGTGAGTAACAGTGACCAATTGAAGAAAGCGTTTGTGTATTTTGATAAGAACCAAAGTGGGTATATTGAGTTTGAAGAATTAAGAGAAGCCCTTTTTGATGATCACCCTAGTGGTGCTCCCAAGAATGAACAACTTGTTCAAGATATCATCTTTGATGCTGATTTGGATAAGGATGGTAGGATAAGTTATCCAGAATTTGAGGCAATGATGACAACGGGGACAGATTGGAAGTTGGCTTCAAGGCAATACTCCAGAGTTATGCTAAATGCACTTAGCATGAAATTGTTCAAAGACAAATCTATGCAACTCAAAAATTAA

Network for GWHGAAZE020455

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	58	296	3.70E-63
PF00036.33	EF-hand_1	306	330	1.20E-06
PF13499.7	EF-hand_7	353	418	1.90E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.362
	SRR3591706	second leaf	0.438
	SRR3591707	mature leaf	0.222
	SRR3591708	Shoot apex	0.566
	SRR3591709	Stem	1.324
	SRR3591710	White floral bud	188.299
	SRR3591711	White flower	10.007
	SRR3591712	Green floral bud	106.548
	SRR3591713	Yellow flower	6.505
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.028
	SRR8316900	Third green stage	22.193
	SRR8316901	Third green stage	14.958
	SRR8316898	Complete white stage	0.032
	SRR8316899	Complete white stage	0.188
	SRR8316903	Complete white stage	0.179
	SRR8316902	Silver flowering stage	1.471
	SRR8316904	Silver flowering stage	2.697
	SRR8316905	Silver flowering stage	1.073
	SRR8316906	Gold flowering stage	0.921
	SRR8316907	Gold flowering stage	0.200
	SRR8316908	Gold flowering stage	0.269
SRP132670	SRR6706286	Control	19.562
	SRR6706287	Light intensity 50%	21.520
	SRR6706288	Light intensity 20%	16.462
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.843
	CNS0095593	Slightly white alabastrum(diploid) 2	2.899
	CNS0095594	Slightly white alabastrum(diploid) 3	2.115
	CNS0095595	Whole white alabastrum(diploid) 2	81.389
	CNS0095596	Whole white alabastrum(diploid) 3	81.610
	CNS0095597	Whole white alabastrum(diploid) 4	137.596
	CNS0095598	Silvery flower (diploied) 1	6.947
	CNS0095599	Silvery flower (diploied) 2	23.491
	CNS0095600	Silvery flower (diploied) 3	3.834
	CNS0095601	Golden flower (diploid) 1	8.249
	CNS0095602	Golden flower (diploid) 2	4.009
	CNS0095603	Golden flower (diploid) 3	3.593
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.153
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.649
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.202
	CNS0095607	Whole white alabastrum(tetraploid) 1	161.059
	CNS0095608	Whole white alabastrum(tetraploid) 2	227.172
	CNS0095609	Whole white alabastrum(tetraploid) 3	78.945
	CNS0095610	Silvery flower (tetraploid) 1	4.194
	CNS0095611	Silvery flower (tetraploid) 2	14.547
	CNS0095612	Silvery flower (tetraploid) 3	40.295
	CNS0095613	Golden flower (tetraploid) 1	7.479
	CNS0095614	Golden flower (tetraploid) 2	1.296
	CNS0095615	Golden flower (tetraploid) 3	17.657
CRA001975	CRR073297	Stem 1	3.542
	CRR073298	Stem 2	2.196
	CRR073299	Stem 3	1.182
	CRR073300	Leaf 1	25.981
	CRR073301	Leaf 2	10.811
	CRR073302	Leaf 3	3.190
	CRR073303	Juvenile bud 1	23.982
	CRR073304	Juvenile bud 2	21.512
	CRR073305	Juvenile bud 3	2.387
	CRR073306	Third green 1	15.555
	CRR073307	Third green 2	12.531
	CRR073308	Third green 3	14.567
	CRR073309	Second white 1	0.497
	CRR073310	Second white 2	3.984
	CRR073311	Second white 3	3.073
	CRR073312	Silver flowering 1	16.463
	CRR073313	Silver flowering 2	11.638
	CRR073314	Silver flowering 3	4.771
	CRR073315	Gold flowering 1	13.816
	CRR073316	Gold flowering 2	5.075
	CRR073317	Gold flowering 3	2.852
	CRR073318	Tawny withering 1	22.867
	CRR073319	Tawny withering 2	13.528
	CRR073320	Tawny withering 3	14.095