Detail information of GWHGAAZE020109


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007224874.10hypothetical protein PRUPE_ppa022710mg [Prunus persica]
COGYP_004916060.17E-158(S)-2,3-epoxysqualene cyclase
Swissprottr|Q8W3Z3|CAS2_BETPL0Cycloartenol synthase 2
trEMBLtr|V4U0P4|V4U0P4_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR66408.1}
TAIR10AT2G07050.10cycloartenol synthase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene7695054376970084-
GWHAAZE00000005mRNA7695054376970084-
GWHAAZE00000005exon7696988476970084-
GWHAAZE00000005exon7696677576966864-
GWHAAZE00000005exon7696278876962982-
GWHAAZE00000005exon7696175176961835-
GWHAAZE00000005exon7695955476959720-
GWHAAZE00000005exon7695826876958456-
GWHAAZE00000005exon7695687376956995-
GWHAAZE00000005exon7695654476956666-
GWHAAZE00000005exon7695583776955935-
GWHAAZE00000005exon7695566376955719-
GWHAAZE00000005exon7695482576954871-
GWHAAZE00000005exon7695457176954714-
GWHAAZE00000005exon7695334776953524-
GWHAAZE00000005exon7695276376952843-
GWHAAZE00000005exon7695255276952635-
GWHAAZE00000005exon7695054376950563-
GWHAAZE00000005CDS7696988476970084-
GWHAAZE00000005CDS7696677576966864-
GWHAAZE00000005CDS7696278876962982-
GWHAAZE00000005CDS7696175176961835-
GWHAAZE00000005CDS7695955476959720-
GWHAAZE00000005CDS7695826876958456-
GWHAAZE00000005CDS7695687376956995-
GWHAAZE00000005CDS7695654476956666-
GWHAAZE00000005CDS7695583776955935-
GWHAAZE00000005CDS7695566376955719-
GWHAAZE00000005CDS7695482576954871-
GWHAAZE00000005CDS7695457176954714-
GWHAAZE00000005CDS7695334776953524-
GWHAAZE00000005CDS7695276376952843-
GWHAAZE00000005CDS7695255276952635-
GWHAAZE00000005CDS7695054376950563-
Transcript Sequence

Network for GWHGAAZE020109

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13249.7SQHop_cyclase_N762941.10E-35
PF13243.7SQHop_cyclase_C3146221.50E-46
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01853CAS1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Steroid biosynthesismap00100

Gene Ontology

GO term OntologyName
GO:0016104biological_processtriterpenoid biosynthetic process
GO:0005811cellular_componentlipid droplet
GO:0000250molecular_functionlanosterol synthase activity
GO:0016866molecular_functionintramolecular transferase activity
GO:0042300molecular_functionbeta-amyrin synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.256
SRR3591706second leaf5.928
SRR3591707mature leaf2.061
SRR3591708Shoot apex3.045
SRR3591709Stem0.162
SRR3591710White floral bud2.175
SRR3591711White flower2.772
SRR3591712Green floral bud1.321
SRR3591713Yellow flower0.493
SRP173429 SRR8316895Juvenile bud stage 0.628
SRR8316896Juvenile bud stage 0.531
SRR8316897Juvenile bud stage 0.462
SRR8316894Third green stage 0.410
SRR8316900Third green stage 0.397
SRR8316901Third green stage 0.576
SRR8316898Complete white stage 0.091
SRR8316899Complete white stage 0.272
SRR8316903Complete white stage 0.834
SRR8316902Silver flowering stage0.004
SRR8316904Silver flowering stage0.227
SRR8316905Silver flowering stage0.023
SRR8316906Gold flowering stage 0.182
SRR8316907Gold flowering stage 0.025
SRR8316908Gold flowering stage 0.150
SRP132670SRR6706286Control0.320
SRR6706287Light intensity 50%0.227
SRR6706288Light intensity 20%0.154
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.377
CNS0095593Slightly white alabastrum(diploid) 20.738
CNS0095594Slightly white alabastrum(diploid) 30.371
CNS0095595Whole white alabastrum(diploid) 21.063
CNS0095596Whole white alabastrum(diploid) 30.035
CNS0095597Whole white alabastrum(diploid) 40.894
CNS0095598Silvery flower (diploied) 18.031
CNS0095599Silvery flower (diploied) 23.745
CNS0095600Silvery flower (diploied) 30.561
CNS0095601Golden flower (diploid) 15.596
CNS0095602Golden flower (diploid) 22.756
CNS0095603Golden flower (diploid) 32.888
CNS0095604Slightly white alabastrum(tetraploid) 10.529
CNS0095605Slightly white alabastrum(tetraploid) 20.266
CNS0095606Slightly white alabastrum(tetraploid) 30.431
CNS0095607Whole white alabastrum(tetraploid) 10.380
CNS0095608Whole white alabastrum(tetraploid) 20.035
CNS0095609Whole white alabastrum(tetraploid) 30.062
CNS0095610Silvery flower (tetraploid) 10.110
CNS0095611Silvery flower (tetraploid) 20.658
CNS0095612Silvery flower (tetraploid) 30.458
CNS0095613Golden flower (tetraploid) 10.066
CNS0095614Golden flower (tetraploid) 20.215
CNS0095615Golden flower (tetraploid) 30.229
CRA001975CRR073297Stem 10.630
CRR073298Stem 20.600
CRR073299Stem 30.418
CRR073300Leaf 10.242
CRR073301Leaf 20.270
CRR073302Leaf 30.249
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.359
CRR073305Juvenile bud 30.163
CRR073306Third green 10.129
CRR073307Third green 20.101
CRR073308Third green 30.066
CRR073309Second white 10.030
CRR073310Second white 20.306
CRR073311Second white 30.196
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.136
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.949
CRR073316Gold flowering 21.563
CRR073317Gold flowering 31.528
CRR073318Tawny withering 10.639
CRR073319Tawny withering 20.673
CRR073320Tawny withering 30.456