Gene detail

Detail information of GWHGAAZE020096

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGE10593.1	5.5566E-112	cinnamate 4-hydroxylase [Lonicera japonica]
Swissprot	tr\|H2DH22\|C7A10_PANGI	2E-74	Cytochrome P450 CYP73A100
trEMBL	tr\|L7Z967\|L7Z967_LONJA	2E-112	Cinnamate 4-hydroxylase {ECO:0000313\|EMBL:AGE10593.1}
TAIR10	AT2G30490.1	6E-43	cinnamate-4-hydroxylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	76572405	76574238	+
GWHAAZE00000005	mRNA	76572405	76574238	+
GWHAAZE00000005	exon	76572405	76572614	+
GWHAAZE00000005	exon	76572802	76572928	+
GWHAAZE00000005	exon	76573579	76573743	+
GWHAAZE00000005	exon	76573801	76574018	+
GWHAAZE00000005	exon	76574134	76574238	+
GWHAAZE00000005	CDS	76572405	76572614	+
GWHAAZE00000005	CDS	76572802	76572928	+
GWHAAZE00000005	CDS	76573579	76573743	+
GWHAAZE00000005	CDS	76573801	76574018	+
GWHAAZE00000005	CDS	76574134	76574238	+

Transcript Sequence
>GWHTAAZE020118 ATGTCCCAAACCTATGGCCCCGTATTTCTACTCAAACTCGGCTCGAAAAACTTAACTGTTGTATCAGAGCCAGAGTTAGCCAACCAAGTCCTCCACGCCCAAGGGGTTGAGTTTGGGTCACGTCCTAGAAATGTCGTGTTCGATATATTCACGGGTAATGGTCAAGACATGGTCTTCACGATCTACGGTGATCATTGGCGAAGATGCGACTTTAAGTCGCAAGATGACCCATTGTTCATCGAGGCAACGAAGTTTAACTCAGAGAGAAGCCGGTTAGCTCAAAGCTTTGAATACAATTATGGAGATTTTATCCCTTTGCTTAGACCATTCTTAAGGGATGCACAAATGAAAGGAGAAATAAGTGAAGAAAATGTGCTCTACATTGTGGAGAACATCAATGTGGCAGCCATAGAGACAACCCTATGGTCAATGGAGTGGGCCATAGCTGAGCTGGTCAACCATCCAACTGTCCAATGCAAAATCCGAGGACGAGATCTCGACCCCACGGTCAAAGAGACCCGAGGCTACACACCCGATACCTTTACTAGTCCCACATATGAACCTCGAACAAGCTACCCTAGGCGGCTACACCATCCCAAAAGAGTCAAAGGTGGTGGTCAACGCTGGTGGCTAGCCAACAACCCGGCATGGTGGAGAAATCCTAGCGAGTTCCGACCGGGCGGTTCATGGAGGAGGAAGGCAGCACAGCGGTTGCGGGAGGGCACCGATAGGGACGAAAAGATTGATGTGAGTGAGAAAGGAGGGCAATTTAGTTTGCACATTGCAAAACATTCCACAGTTGTCTTCAATCCTATTGTGGCATAA

Network for GWHGAAZE020096

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	2	68	1.60E-09
PF00067.23	p450	118	162	3.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00487	CYP73A	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Degradation of aromatic compounds	map01220
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130
		Phenylpropanoid biosynthesis	map00940
		Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.633
	SRR3591706	second leaf	0.430
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.109
	SRR3591709	Stem	10.321
	SRR3591710	White floral bud	0.203
	SRR3591711	White flower	0.290
	SRR3591712	Green floral bud	0.126
	SRR3591713	Yellow flower	0.572
SRP173429	SRR8316895	Juvenile bud stage	0.026
	SRR8316896	Juvenile bud stage	0.057
	SRR8316897	Juvenile bud stage	0.107
	SRR8316894	Third green stage	0.019
	SRR8316900	Third green stage	0.060
	SRR8316901	Third green stage	0.267
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.031
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.011
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.023
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.343
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.005
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.081
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.032
	CNS0095595	Whole white alabastrum(diploid) 2	0.023
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.039
	CNS0095598	Silvery flower (diploied) 1	0.046
	CNS0095599	Silvery flower (diploied) 2	0.009
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.019
	CNS0095602	Golden flower (diploid) 2	0.023
	CNS0095603	Golden flower (diploid) 3	0.022
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.048
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.046
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.204
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.016
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.090
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.018
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.273
	CNS0095614	Golden flower (tetraploid) 2	0.143
	CNS0095615	Golden flower (tetraploid) 3	0.123
CRA001975	CRR073297	Stem 1	0.087
	CRR073298	Stem 2	0.080
	CRR073299	Stem 3	0.337
	CRR073300	Leaf 1	0.192
	CRR073301	Leaf 2	0.086
	CRR073302	Leaf 3	0.136
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.081
	CRR073306	Third green 1	0.085
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.054
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.250
	CRR073313	Silver flowering 2	0.594
	CRR073314	Silver flowering 3	0.359
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.015
	CRR073318	Tawny withering 1	2.040
	CRR073319	Tawny withering 2	1.997
	CRR073320	Tawny withering 3	1.268