Gene detail

Detail information of GWHGAAZE019976

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008223815.1	5.2429E-115	PREDICTED: galacturonokinase isoform X4 [Prunus mume]
COG	YP_003574846.1	1E-32	galactokinase
Swissprot	tr\|Q8VYG2\|GALAK_ARATH	7E-92	Galacturonokinase
trEMBL	tr\|K4CC83\|K4CC83_SOLLC	3E-110	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc07g014640.2.1}
TAIR10	AT3G10700.1	5E-75	galacturonic acid kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	71374700	71387970	+
GWHAAZE00000005	mRNA	71374700	71387970	+
GWHAAZE00000005	exon	71374700	71374795	+
GWHAAZE00000005	exon	71375684	71375727	+
GWHAAZE00000005	exon	71376566	71376701	+
GWHAAZE00000005	exon	71378754	71378819	+
GWHAAZE00000005	exon	71380112	71380191	+
GWHAAZE00000005	exon	71380388	71380487	+
GWHAAZE00000005	exon	71380888	71381063	+
GWHAAZE00000005	exon	71382071	71382175	+
GWHAAZE00000005	exon	71382266	71382442	+
GWHAAZE00000005	exon	71383988	71384028	+
GWHAAZE00000005	exon	71384137	71384165	+
GWHAAZE00000005	exon	71384296	71384365	+
GWHAAZE00000005	exon	71384809	71384898	+
GWHAAZE00000005	exon	71387620	71387970	+
GWHAAZE00000005	CDS	71374700	71374795	+
GWHAAZE00000005	CDS	71375684	71375727	+
GWHAAZE00000005	CDS	71376566	71376701	+
GWHAAZE00000005	CDS	71378754	71378819	+
GWHAAZE00000005	CDS	71380112	71380191	+
GWHAAZE00000005	CDS	71380388	71380487	+
GWHAAZE00000005	CDS	71380888	71381063	+
GWHAAZE00000005	CDS	71382071	71382175	+
GWHAAZE00000005	CDS	71382266	71382442	+
GWHAAZE00000005	CDS	71383988	71384028	+
GWHAAZE00000005	CDS	71384137	71384165	+
GWHAAZE00000005	CDS	71384296	71384365	+
GWHAAZE00000005	CDS	71384809	71384898	+
GWHAAZE00000005	CDS	71387620	71387864	+
GWHAAZE00000005	three_prime_UTR	71387865	71387970	+

Transcript Sequence
>GWHTAAZE019998 ATGAATTGTACTACGGTGCTTCAGGGTGGTACTGTTTCGGCTATGACAATTGATAAGGGCATACTTCTCGGATTTGTTCCTTCTCGTGATTCTCAGGTTTGTCTACAGTCAGGACAATTCAAAGGAGAAGTTACGTTCAGAGTAGATGAAGTTCAGATTCCAAGTCATATTGCCAAGTCAAACAATTCATCCAATATTCAAGAAGAAGGTAGTTGGGGAAGTTATGCCAGAGGAGCTGTATATGCACTACAATCTAAAGGAAACCGTCTAATGCAGGGTATTACCGGATTTATTTGTGGTTCCGAGGGTCTTGACAGTTCAGGTCTTAGCTCTTCAGCTGCTGTCGGAATTGCGTACCTTTTGGCTTTGGAAAGTGCAAATAATCTCACTATCTCCCCTACTGAAAATATTGAGTACGATCGGCTGATCGAAAATGAATATTTAGGTCTGAAAAATGGCATATTGGATCAATCAGCTATATTGCTTTCAAGCTATGGTTGCCTAACTTGTATGAATTGCAAGACCAAAGAACACAAGCTTATACACCCACCAAAGTTTCAAAAGAATTACAAAACGGATAAAAAGAAAGCATACAAGATATTACTGGCATTTTCAGGCCTAAAGCAGGCATTGACGACTAATCCTGGATATAACCGTAGAGTTTCCGAGTGTCAAGAGGCTGCAAAAATTCTGCTGCATATAGAATGTGAAAATCTGAACAAGGACTCTTGTGCATTTGCGGTATCATCTACCGGGAAGAGATGCGTGCTAGAGAAGCATGTGCGGAGGAGTGGGCTAGAAGTGAATGTGCTGGGAATCTCATCGGACTCTCTTCTCGAGTCTCACTTCACCCAATCTCTCTGCTCACCTCAGTGCTACAATAGCTGCCCCAATATTGTTGATCTCTACTTCCACCTCGCTGCCGGTGAAAGTAACATTATACAACCTCGCTGCCGGAAAGGTGAGAGAATGTGCGGTGGTGCTTCAGGTAAAGGAGGAGTTGAGCCTCTCCTGTCCAATGTTGAGCCAGAAGCATATAAAGCATACAAGTCAAAATTAGAACCACATCTGGCTAGAAGAGCAGAGCATTATTTCTCGGAAAATATGAGGGTTCTCAAAGGTTTTGAAGCATGGACCTTGGGTAGTTTAGAAGATTTTGGAAAGCTTATCTCGGCCTCTGGCTTAAGTTCCATTCAGAACTATGAATGCGGTTCCGAGCCACTGATACAACTGTACCAGATCCTAGTGAAGGCTCCGGGCATATACGGAGCGCGGTTCAGTGGGGCCGGCTTTCGAGGTTGTTGCGTCGCATTCGTAGACGCTGACCGAGCTTCGGAAGCTGCATTGTATGTCAAGAATCACTATCGAAAGCTCCAACCCGAGCTTGCCGCACAAACTAATTCTGAAACATCAGTTCTTATATGCGAGGGTGGCGACTCTGCCCGAGTTATTTGAAGCAGATAGATATTTTAGCCCTAAATTCTTATGTATATTCATTTTGTTGTAACTAGCAGTCTGGCACGCACTTGCAATATTATATCTGGTAATTTTTTTTATGATA

Network for GWHGAAZE019976

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00288.27	GHMP_kinases_N	106	162	1.90E-05
PF06521.12	PAR1	234	266	1.90E-11
PF06521.12	PAR1	261	320	1.90E-21
PF08544.14	GHMP_kinases_C	381	456	3.60E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18677	GALAK	Metabolic pathways	map01100
K18677	GALAK	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity
GO:0016773	molecular_function	phosphotransferase activity, alcohol group as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.433
	SRR3591706	second leaf	14.007
	SRR3591707	mature leaf	7.519
	SRR3591708	Shoot apex	13.610
	SRR3591709	Stem	33.476
	SRR3591710	White floral bud	12.346
	SRR3591711	White flower	9.192
	SRR3591712	Green floral bud	22.837
	SRR3591713	Yellow flower	5.131
SRP173429	SRR8316895	Juvenile bud stage	21.986
	SRR8316896	Juvenile bud stage	23.979
	SRR8316897	Juvenile bud stage	9.814
	SRR8316894	Third green stage	10.728
	SRR8316900	Third green stage	25.664
	SRR8316901	Third green stage	27.040
	SRR8316898	Complete white stage	5.864
	SRR8316899	Complete white stage	25.779
	SRR8316903	Complete white stage	8.027
	SRR8316902	Silver flowering stage	2.939
	SRR8316904	Silver flowering stage	5.889
	SRR8316905	Silver flowering stage	2.676
	SRR8316906	Gold flowering stage	5.365
	SRR8316907	Gold flowering stage	5.461
	SRR8316908	Gold flowering stage	5.376
SRP132670	SRR6706286	Control	15.153
	SRR6706287	Light intensity 50%	16.326
	SRR6706288	Light intensity 20%	17.893
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.166
	CNS0095593	Slightly white alabastrum(diploid) 2	26.008
	CNS0095594	Slightly white alabastrum(diploid) 3	26.166
	CNS0095595	Whole white alabastrum(diploid) 2	21.514
	CNS0095596	Whole white alabastrum(diploid) 3	23.104
	CNS0095597	Whole white alabastrum(diploid) 4	21.836
	CNS0095598	Silvery flower (diploied) 1	13.880
	CNS0095599	Silvery flower (diploied) 2	12.574
	CNS0095600	Silvery flower (diploied) 3	7.547
	CNS0095601	Golden flower (diploid) 1	9.996
	CNS0095602	Golden flower (diploid) 2	7.557
	CNS0095603	Golden flower (diploid) 3	6.570
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.851
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.939
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.218
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.639
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.266
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.725
	CNS0095610	Silvery flower (tetraploid) 1	9.439
	CNS0095611	Silvery flower (tetraploid) 2	6.475
	CNS0095612	Silvery flower (tetraploid) 3	10.298
	CNS0095613	Golden flower (tetraploid) 1	3.743
	CNS0095614	Golden flower (tetraploid) 2	6.898
	CNS0095615	Golden flower (tetraploid) 3	2.199
CRA001975	CRR073297	Stem 1	22.268
	CRR073298	Stem 2	20.157
	CRR073299	Stem 3	15.002
	CRR073300	Leaf 1	16.371
	CRR073301	Leaf 2	15.921
	CRR073302	Leaf 3	14.372
	CRR073303	Juvenile bud 1	16.244
	CRR073304	Juvenile bud 2	9.829
	CRR073305	Juvenile bud 3	11.434
	CRR073306	Third green 1	5.570
	CRR073307	Third green 2	5.172
	CRR073308	Third green 3	5.445
	CRR073309	Second white 1	1.698
	CRR073310	Second white 2	2.781
	CRR073311	Second white 3	1.383
	CRR073312	Silver flowering 1	1.315
	CRR073313	Silver flowering 2	0.974
	CRR073314	Silver flowering 3	1.266
	CRR073315	Gold flowering 1	8.561
	CRR073316	Gold flowering 2	10.419
	CRR073317	Gold flowering 3	6.730
	CRR073318	Tawny withering 1	29.171
	CRR073319	Tawny withering 2	28.793
	CRR073320	Tawny withering 3	39.369