Detail information of GWHGAAZE019934


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO98814.10unnamed protein product [Coffea canephora]
COGNP_490235.13E-11WD repeat-containing protein
trEMBLtr|A0A068TS78|A0A068TS78_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313|EMBL:CDO98814.1}
TAIR10AT5G11240.16E-163transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene6878620768794819-
GWHAAZE00000005mRNA6878620768794819-
GWHAAZE00000005exon6879464968794819-
GWHAAZE00000005exon6879442268794537-
GWHAAZE00000005exon6879323868793392-
GWHAAZE00000005exon6879244168792529-
GWHAAZE00000005exon6879174868792282-
GWHAAZE00000005exon6879019368790294-
GWHAAZE00000005exon6878983368789987-
GWHAAZE00000005exon6878964768789726-
GWHAAZE00000005exon6878941468789525-
GWHAAZE00000005exon6878789068787964-
GWHAAZE00000005exon6878620768786278-
GWHAAZE00000005CDS6879464968794819-
GWHAAZE00000005CDS6879442268794537-
GWHAAZE00000005CDS6879323868793392-
GWHAAZE00000005CDS6879244168792529-
GWHAAZE00000005CDS6879174868792282-
GWHAAZE00000005CDS6879019368790294-
GWHAAZE00000005CDS6878983368789987-
GWHAAZE00000005CDS6878964768789726-
GWHAAZE00000005CDS6878941468789525-
GWHAAZE00000005CDS6878789068787964-
GWHAAZE00000005CDS6878620768786278-
Transcript Sequence

Network for GWHGAAZE019934

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD401682050.0028
PF04003.13Utp124385281.10E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14546UTP5, WDR43 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf33.253
SRR3591706second leaf28.633
SRR3591707mature leaf15.486
SRR3591708Shoot apex35.234
SRR3591709Stem33.052
SRR3591710White floral bud24.750
SRR3591711White flower22.948
SRR3591712Green floral bud33.083
SRR3591713Yellow flower18.943
SRP173429 SRR8316895Juvenile bud stage 15.199
SRR8316896Juvenile bud stage 18.502
SRR8316897Juvenile bud stage 11.053
SRR8316894Third green stage 10.691
SRR8316900Third green stage 26.968
SRR8316901Third green stage 25.104
SRR8316898Complete white stage 6.630
SRR8316899Complete white stage 29.056
SRR8316903Complete white stage 14.583
SRR8316902Silver flowering stage9.326
SRR8316904Silver flowering stage13.757
SRR8316905Silver flowering stage6.242
SRR8316906Gold flowering stage 21.338
SRR8316907Gold flowering stage 14.068
SRR8316908Gold flowering stage 24.316
SRP132670SRR6706286Control26.139
SRR6706287Light intensity 50%28.039
SRR6706288Light intensity 20%29.619
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.210
CNS0095593Slightly white alabastrum(diploid) 219.532
CNS0095594Slightly white alabastrum(diploid) 317.421
CNS0095595Whole white alabastrum(diploid) 215.002
CNS0095596Whole white alabastrum(diploid) 315.883
CNS0095597Whole white alabastrum(diploid) 412.988
CNS0095598Silvery flower (diploied) 121.211
CNS0095599Silvery flower (diploied) 212.344
CNS0095600Silvery flower (diploied) 319.606
CNS0095601Golden flower (diploid) 113.031
CNS0095602Golden flower (diploid) 218.426
CNS0095603Golden flower (diploid) 316.412
CNS0095604Slightly white alabastrum(tetraploid) 117.415
CNS0095605Slightly white alabastrum(tetraploid) 214.262
CNS0095606Slightly white alabastrum(tetraploid) 335.418
CNS0095607Whole white alabastrum(tetraploid) 112.022
CNS0095608Whole white alabastrum(tetraploid) 29.438
CNS0095609Whole white alabastrum(tetraploid) 324.668
CNS0095610Silvery flower (tetraploid) 123.009
CNS0095611Silvery flower (tetraploid) 217.882
CNS0095612Silvery flower (tetraploid) 315.522
CNS0095613Golden flower (tetraploid) 113.316
CNS0095614Golden flower (tetraploid) 221.788
CNS0095615Golden flower (tetraploid) 316.065
CRA001975CRR073297Stem 124.966
CRR073298Stem 221.508
CRR073299Stem 318.897
CRR073300Leaf 123.076
CRR073301Leaf 220.150
CRR073302Leaf 318.681
CRR073303Juvenile bud 117.229
CRR073304Juvenile bud 213.698
CRR073305Juvenile bud 319.764
CRR073306Third green 16.056
CRR073307Third green 25.666
CRR073308Third green 37.517
CRR073309Second white 18.154
CRR073310Second white 27.705
CRR073311Second white 39.554
CRR073312Silver flowering 15.794
CRR073313Silver flowering 24.502
CRR073314Silver flowering 35.335
CRR073315Gold flowering 17.293
CRR073316Gold flowering 212.798
CRR073317Gold flowering 38.631
CRR073318Tawny withering 124.393
CRR073319Tawny withering 221.721
CRR073320Tawny withering 329.651