Gene detail

Detail information of GWHGAAZE019726

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006382191.1	1.7092E-106	hypothetical protein POPTR_0006s29210g [Populus trichocarpa]
Swissprot	tr\|Q1PEY5\|HIBC2_ARATH	3E-89	Probable 3-hydroxyisobutyryl-CoA hydrolase 2
trEMBL	tr\|U5G8W9\|U5G8W9_POPTR	6E-107	Uncharacterized protein {ECO:0000313\|EMBL:ERP59988.1}
TAIR10	AT2G30650.1	1E-73	ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	59533546	59538238	-
GWHAAZE00000005	mRNA	59533546	59538238	-
GWHAAZE00000005	exon	59538155	59538238	-
GWHAAZE00000005	exon	59537519	59537603	-
GWHAAZE00000005	exon	59536792	59536877	-
GWHAAZE00000005	exon	59535457	59535587	-
GWHAAZE00000005	exon	59534822	59534882	-
GWHAAZE00000005	exon	59534438	59534536	-
GWHAAZE00000005	exon	59534232	59534333	-
GWHAAZE00000005	exon	59533546	59533683	-
GWHAAZE00000005	CDS	59538155	59538238	-
GWHAAZE00000005	CDS	59537519	59537603	-
GWHAAZE00000005	CDS	59536792	59536877	-
GWHAAZE00000005	CDS	59535457	59535587	-
GWHAAZE00000005	CDS	59534822	59534882	-
GWHAAZE00000005	CDS	59534438	59534536	-
GWHAAZE00000005	CDS	59534232	59534333	-
GWHAAZE00000005	CDS	59533546	59533683	-

Transcript Sequence
>GWHTAAZE019748 GTTGCACTCATAAATGGAATTGTAATGGGTGGAGGTGCTGGAATATCCATGCATGCGAGATTTCGAGTTGTTACAGAAAAGACTGTATTTGCCATGCCGGAAGCATCAATAGGATTATTTCCGGATGTTGGGGCGTCTCATTTCTTATCTCGGCTTCCTGGCTTCCTTGGAGAATATCTAGGGTTGACAGGTACAAGAATAGATGGGGGTTCCATGCTTGCATGTGGCCTTGCAACTCATTTTATCCTTTCAAAGGATATTGCTGCCTTGGAAAATGCACTAGATATGGTGGCCCCATCTAGTGACTTTGATATATCAACTATAACTGGGATCATCAACAAATATGATCAACAAGTGGACTTGACACAAAATAATATAAATTCTAGATTGGAGATCATCAACATATGCTTTTCAGGAGAAACTGTTGAAGAAATTTTATCATCATTGGAGGAAGTTTTTGCTAGTAGAGCAGAGAAATGGATCGTTGGTGCAATAAACTCAATGAAAAAAGCTTCTCCGACGAGCCTAAAAGTTTTTCTAAAATCGATTAAGGATGGTCGGGCACAGAAGCTTGATCGATGTCTCATACGTGAATTTAATGCCCTTTCTCACATCTTGCGGAGAACAATTAGTGACGATTTCTTTGAGTGGGCACCTTCGAAACTGGAGTTGGTGACTGAAGAAATGGTGCAAACACTTTTCTCCAATGTTGATGATGAAGAGTGGGAATCATTAAAACTTCCGGCAAGATCCAACCTAGCCTACCCTATGTTATCAAGACTCTAG

Network for GWHGAAZE019726

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.6	ECH_2	1	216	3.60E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.426
	SRR3591710	White floral bud	9.130
	SRR3591711	White flower	0.611
	SRR3591712	Green floral bud	66.685
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	40.178
	SRR8316896	Juvenile bud stage	71.932
	SRR8316897	Juvenile bud stage	3.796
	SRR8316894	Third green stage	39.660
	SRR8316900	Third green stage	219.230
	SRR8316901	Third green stage	188.270
	SRR8316898	Complete white stage	28.447
	SRR8316899	Complete white stage	230.555
	SRR8316903	Complete white stage	29.781
	SRR8316902	Silver flowering stage	1.409
	SRR8316904	Silver flowering stage	1.442
	SRR8316905	Silver flowering stage	0.737
	SRR8316906	Gold flowering stage	0.223
	SRR8316907	Gold flowering stage	0.052
	SRR8316908	Gold flowering stage	0.234
SRP132670	SRR6706286	Control	92.349
	SRR6706287	Light intensity 50%	116.315
	SRR6706288	Light intensity 20%	147.983
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.848
	CNS0095593	Slightly white alabastrum(diploid) 2	26.658
	CNS0095594	Slightly white alabastrum(diploid) 3	24.100
	CNS0095595	Whole white alabastrum(diploid) 2	43.934
	CNS0095596	Whole white alabastrum(diploid) 3	51.168
	CNS0095597	Whole white alabastrum(diploid) 4	35.930
	CNS0095598	Silvery flower (diploied) 1	0.245
	CNS0095599	Silvery flower (diploied) 2	0.050
	CNS0095600	Silvery flower (diploied) 3	2.389
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.296
	CNS0095603	Golden flower (diploid) 3	0.111
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.528
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.138
	CNS0095606	Slightly white alabastrum(tetraploid) 3	67.284
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.089
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.769
	CNS0095609	Whole white alabastrum(tetraploid) 3	148.925
	CNS0095610	Silvery flower (tetraploid) 1	0.842
	CNS0095611	Silvery flower (tetraploid) 2	1.610
	CNS0095612	Silvery flower (tetraploid) 3	1.346
	CNS0095613	Golden flower (tetraploid) 1	0.474
	CNS0095614	Golden flower (tetraploid) 2	0.411
	CNS0095615	Golden flower (tetraploid) 3	0.657
CRA001975	CRR073297	Stem 1	31.790
	CRR073298	Stem 2	33.337
	CRR073299	Stem 3	21.641
	CRR073300	Leaf 1	124.666
	CRR073301	Leaf 2	96.355
	CRR073302	Leaf 3	167.129
	CRR073303	Juvenile bud 1	154.280
	CRR073304	Juvenile bud 2	206.792
	CRR073305	Juvenile bud 3	80.876
	CRR073306	Third green 1	1.353
	CRR073307	Third green 2	0.149
	CRR073308	Third green 3	1.172
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.037
	CRR073311	Second white 3	0.365
	CRR073312	Silver flowering 1	0.079
	CRR073313	Silver flowering 2	0.083
	CRR073314	Silver flowering 3	0.478
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000