Detail information of GWHGAAZE019720


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02987.11.65697E-96unnamed protein product [Coffea canephora]
Swissprottr|Q6NMB0|HIBC3_ARATH2E-72Probable 3-hydroxyisobutyryl-CoA hydrolase 3
trEMBLtr|A0A068U3S9|A0A068U3S9_COFCA6E-97Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313|EMBL:CDP02987.1}
TAIR10AT5G65940.21E-61beta-hydroxyisobutyryl-CoA hydrolase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene5931152359319446-
GWHAAZE00000005mRNA5931152359319446-
GWHAAZE00000005exon5931938759319446-
GWHAAZE00000005exon5931771459317777-
GWHAAZE00000005exon5931681059316889-
GWHAAZE00000005exon5931636359316450-
GWHAAZE00000005exon5931524559315327-
GWHAAZE00000005exon5931353059313660-
GWHAAZE00000005exon5931319059313250-
GWHAAZE00000005exon5931257559312673-
GWHAAZE00000005exon5931236559312466-
GWHAAZE00000005exon5931152359311594-
GWHAAZE00000005CDS5931938759319446-
GWHAAZE00000005CDS5931771459317777-
GWHAAZE00000005CDS5931681059316889-
GWHAAZE00000005CDS5931636359316450-
GWHAAZE00000005CDS5931524559315327-
GWHAAZE00000005CDS5931353059313660-
GWHAAZE00000005CDS5931319059313250-
GWHAAZE00000005CDS5931257559312673-
GWHAAZE00000005CDS5931236559312466-
GWHAAZE00000005CDS5931152359311594-
Transcript Sequence

Network for GWHGAAZE019720

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16113.6ECH_221181.80E-40
PF16113.6ECH_21262616.40E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05605HIBCH Metabolic pathways map01100
Carbon metabolismmap01200
Propanoate metabolismmap00640
Valine, leucine and isoleucine degradationmap00280
beta-Alanine metabolismmap00410

Gene Ontology

GO term OntologyName
GO:0003860molecular_function3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.108
SRR3591709Stem0.000
SRR3591710White floral bud2.574
SRR3591711White flower42.935
SRR3591712Green floral bud0.000
SRR3591713Yellow flower36.626
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.163
SRR8316897Juvenile bud stage 0.047
SRR8316894Third green stage 0.200
SRR8316900Third green stage 0.685
SRR8316901Third green stage 0.958
SRR8316898Complete white stage 3.946
SRR8316899Complete white stage 0.048
SRR8316903Complete white stage 3.416
SRR8316902Silver flowering stage315.955
SRR8316904Silver flowering stage425.058
SRR8316905Silver flowering stage252.841
SRR8316906Gold flowering stage 820.127
SRR8316907Gold flowering stage 695.040
SRR8316908Gold flowering stage 458.210
SRP132670SRR6706286Control0.053
SRR6706287Light intensity 50%0.048
SRR6706288Light intensity 20%0.083
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.587
CNS0095593Slightly white alabastrum(diploid) 20.399
CNS0095594Slightly white alabastrum(diploid) 30.314
CNS0095595Whole white alabastrum(diploid) 21.743
CNS0095596Whole white alabastrum(diploid) 32.047
CNS0095597Whole white alabastrum(diploid) 41.469
CNS0095598Silvery flower (diploied) 132.513
CNS0095599Silvery flower (diploied) 237.932
CNS0095600Silvery flower (diploied) 3136.512
CNS0095601Golden flower (diploid) 128.850
CNS0095602Golden flower (diploid) 269.257
CNS0095603Golden flower (diploid) 367.196
CNS0095604Slightly white alabastrum(tetraploid) 10.085
CNS0095605Slightly white alabastrum(tetraploid) 20.174
CNS0095606Slightly white alabastrum(tetraploid) 30.080
CNS0095607Whole white alabastrum(tetraploid) 10.456
CNS0095608Whole white alabastrum(tetraploid) 20.232
CNS0095609Whole white alabastrum(tetraploid) 30.131
CNS0095610Silvery flower (tetraploid) 186.964
CNS0095611Silvery flower (tetraploid) 279.922
CNS0095612Silvery flower (tetraploid) 3353.293
CNS0095613Golden flower (tetraploid) 1149.914
CNS0095614Golden flower (tetraploid) 287.679
CNS0095615Golden flower (tetraploid) 388.398
CRA001975CRR073297Stem 10.215
CRR073298Stem 20.322
CRR073299Stem 30.196
CRR073300Leaf 10.365
CRR073301Leaf 20.244
CRR073302Leaf 30.615
CRR073303Juvenile bud 10.572
CRR073304Juvenile bud 20.306
CRR073305Juvenile bud 30.220
CRR073306Third green 1208.180
CRR073307Third green 2155.988
CRR073308Third green 3153.630
CRR073309Second white 1334.468
CRR073310Second white 2534.744
CRR073311Second white 3473.633
CRR073312Silver flowering 1281.328
CRR073313Silver flowering 2184.229
CRR073314Silver flowering 3238.705
CRR073315Gold flowering 10.558
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.020
CRR073319Tawny withering 20.463
CRR073320Tawny withering 30.000