Gene detail

Detail information of GWHGAAZE019717

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02987.1	5.05536E-78	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LKJ1\|HIBC1_ARATH	5E-63	3-hydroxyisobutyryl-CoA hydrolase 1
trEMBL	tr\|A0A068U3S9\|A0A068U3S9_COFCA	2E-78	Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313\|EMBL:CDP02987.1}
TAIR10	AT5G65940.2	1E-53	beta-hydroxyisobutyryl-CoA hydrolase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	59092342	59096586	-
GWHAAZE00000005	mRNA	59092342	59096586	-
GWHAAZE00000005	exon	59092342	59092452	-
GWHAAZE00000005	exon	59092557	59092655	-
GWHAAZE00000005	exon	59092923	59092983	-
GWHAAZE00000005	exon	59094715	59094819	-
GWHAAZE00000005	exon	59095440	59095546	-
GWHAAZE00000005	exon	59096103	59096186	-
GWHAAZE00000005	exon	59096494	59096586	-
GWHAAZE00000005	CDS	59096494	59096586	-
GWHAAZE00000005	CDS	59096103	59096186	-
GWHAAZE00000005	CDS	59095440	59095546	-
GWHAAZE00000005	CDS	59094715	59094819	-
GWHAAZE00000005	CDS	59092923	59092983	-
GWHAAZE00000005	CDS	59092557	59092655	-
GWHAAZE00000005	CDS	59092342	59092452	-

Transcript Sequence
>GWHTAAZE019739 ATGAATGAAATAGGGCACTGGACTTTTGGTGCAAGTTTTTACAGGAAGCAACTTACTTTAGACTACTTACTTGGAACATATAAAAAGCCAGTGGTTGCACTCATAAATGGAATTGTAATGGGTGGAGGTGCTGGAATATCCATGCATGCGAGATTTCGAGTTGTTACAGAAAAGACCGTATTTGCCATGCCGGAAGCATCAATAGGATTATTTCCGGATGTTGGGGCGTCTCATTTCTTATCTCGGCTTCCTGGCTTCCTTGGTAATTTAGCTGAGAAAATTATCACTTTTTATACATATATACAGAGAATATCTGGGGTTAACAGTGCAAGAATAGATGGGGTTCCATGCTTGCATGTGGACTTGCAACTCATTTTATCCTTTCAAAGATTGGAGATCATCAACATATGCTTTTCAGAAGAAACTGTTGAAGAAATAATATCATCGTTGGAGGAAGTTTTTGCTAGTAGAGCAGAGAAATGGATCATTGGTGCAATAAACTCAATGAACAAAGCTTCTCCAACGAGCCTAAAAGTTTTTCTAAAATCGATTAGGGATGGTCGGGCACAGAAGCTTGATCGATGTCTCATACGTGAATTTAATGCCCTTTCTCACATCTTGCGGAGAACAATTAGTGACGATTTTTTTGAGGTTGTTTAA

Network for GWHGAAZE019717

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.6	ECH_2	11	89	2.20E-37
PF16113.6	ECH_2	129	218	6.50E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.062
	SRR3591710	White floral bud	3.639
	SRR3591711	White flower	0.281
	SRR3591712	Green floral bud	37.029
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.101
	SRR8316896	Juvenile bud stage	11.428
	SRR8316897	Juvenile bud stage	5.000
	SRR8316894	Third green stage	6.046
	SRR8316900	Third green stage	34.505
	SRR8316901	Third green stage	24.278
	SRR8316898	Complete white stage	2.741
	SRR8316899	Complete white stage	19.205
	SRR8316903	Complete white stage	3.692
	SRR8316902	Silver flowering stage	0.027
	SRR8316904	Silver flowering stage	0.084
	SRR8316905	Silver flowering stage	0.045
	SRR8316906	Gold flowering stage	0.054
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.121
SRP132670	SRR6706286	Control	7.108
	SRR6706287	Light intensity 50%	8.707
	SRR6706288	Light intensity 20%	9.729
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.182
	CNS0095593	Slightly white alabastrum(diploid) 2	1.262
	CNS0095594	Slightly white alabastrum(diploid) 3	1.207
	CNS0095595	Whole white alabastrum(diploid) 2	2.348
	CNS0095596	Whole white alabastrum(diploid) 3	2.839
	CNS0095597	Whole white alabastrum(diploid) 4	2.068
	CNS0095598	Silvery flower (diploied) 1	0.034
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.148
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.875
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.923
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.818
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.329
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.780
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.507
	CNS0095610	Silvery flower (tetraploid) 1	0.151
	CNS0095611	Silvery flower (tetraploid) 2	0.382
	CNS0095612	Silvery flower (tetraploid) 3	0.177
	CNS0095613	Golden flower (tetraploid) 1	0.065
	CNS0095614	Golden flower (tetraploid) 2	0.091
	CNS0095615	Golden flower (tetraploid) 3	0.048
CRA001975	CRR073297	Stem 1	1.507
	CRR073298	Stem 2	3.829
	CRR073299	Stem 3	2.048
	CRR073300	Leaf 1	5.411
	CRR073301	Leaf 2	5.406
	CRR073302	Leaf 3	8.499
	CRR073303	Juvenile bud 1	5.958
	CRR073304	Juvenile bud 2	4.369
	CRR073305	Juvenile bud 3	0.730
	CRR073306	Third green 1	0.067
	CRR073307	Third green 2	0.014
	CRR073308	Third green 3	0.071
	CRR073309	Second white 1	0.023
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.015
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000