Gene detail

Detail information of GWHGAAZE019706

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007037693.1	2.4463E-124	NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q8LKZ8\|RPS2_ARATH	8E-42	Disease resistance protein RPS2
trEMBL	tr\|A0A061G5B3\|A0A061G5B3_THECC	9E-125	NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313\|EMBL:EOY22194.1}
TAIR10	AT4G26090.1	7E-38	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	58549296	58551695	+
GWHAAZE00000005	mRNA	58549296	58551695	+
GWHAAZE00000005	exon	58549296	58551695	+
GWHAAZE00000005	CDS	58549296	58551695	+

Transcript Sequence
>GWHTAAZE019728 ATGCAGCAAAGTATTGTGCGAAGACTAAACCTTGATGTTGAAGGCGCCAGTGATGACAAAGTCGCCGAAAGAATACAGGGAGAGTTATGGGATAAGAAGTGTTTGCTACTTCTGGATGGGGTTAAGGAAGATCTCAAATTAAACCAAATTGGGATTGATCTTAATTATGGGAATGGTAGCAAGCTAGTGTTGACAACTACGGTGGGTCATTTTTTTCACTTGCCTGTTGACAAGGAGGTTAGAATTGAAAGATTATCCGATGACGAAGCAATGTATATGTTTAAAAAAGTTCTAGGTCCGTCAAAATGTAAATCTTGGTCGGTTATGGCAGGAGTAGTTAAATGCTGCAACAATTGTCCGTTTGTGATAAAAATGATAGCAAGTGCCTTCAAAAAGAAAGAAACAAAGGAGAGCTGGGACCAAGGATATGCAAATTTGATAAGTTTTCCTGATGAGGGTGATGTTGCCATTCAAAAAGTGTATAAATATTTAGAATTTTGTTGTGATCAATTGGAGGGCGCTCAAAAGGATTGCCTTTTGTACTGTGCATTATATCCCGAAGGGAGTGACATTGGTGCAGATTGCTTATTGGATTGTTGGGCAGCTGAAGATTTGTATGGAACTAACAAAGTACGTAACCTTGGGCGTTATATATTGAATGAACTTAAAAAGGTGTCTTTACTGGAGGAGCATGTGTATAGGCATGGAGAATATGTTAGGATGCCAAAATTGATTCGGAAAGTGGCATTGGATAAGTTGTTAGCTGATTGTGAACATAAACATTTGGTGAAAATCAGTGAATCAGTACAAGATGCCCCAAGCATGGAAGACTGGAACCAGAAGAATCGAATTTCGTTGGTTGACAATAAACTGACAACGTTACCTGAACGCCCAGATTGTCCAATGCTTTCCACACTAATTTTGCAAAGAAATCAAAGTTTGAACAAAATTCCTAACTTTTTCTTTGAGAATGCTGGAAATCTCCGAGTTTTGGACTTGAGTCATACTGGAATCGCATCACTTCCATCTTCACTATGGAAGCTGAAACTTTTGAAAGTCCTGTATCTAAATGATTGCATTTGCTTGGCGAAGCTTCCATCTGAAATTGGAGAATTTGAGTCTCTTCAAGTGCTTGATATAAGAGGCAGTGGCAGTGGGGTTGACAATATACCACCCCAAAATGAGGGTGTGCTCGGGACGATCCACGTGCCTATTCAAAAATTTTTATTCGGGAAACTCAAGCCTGGTACATGTACACCTCTAACCAAGATAGAAAAATTGCGCAATTTGAAGCGGTTGCTGGTTTCGTTCAATAATTTTGGCAATGAAATTGATGCTCAATATATATCACTTTATTGCGATGTCATTTCCAAGATTTCTACTACATTGGAAGAGTTGGTCATTGATGTGAAATCAGACAAGAAGTGTTGCGGTGAGATGATTAATATGGTGAGAGACAAGGTAGCAGCTACCATGACAAAGCTGACAACTCTCAAGTTTTGCTTTGAAGACGGTGTTGAAGATGTCATAAAATTAGTTACTGATACTCCACAAACCTATTATCCCCTAGCAGATGATCTTACAAGTTTTGTTGAAAAATTAGATGGCTCTGCATCCCAATCATTTCAACTTTTCATCAGTTGCTCGATCTCATCACGTCCTCGAATTCCGATGCATCACCAGTATAGAAGGTATTTGAAATATTGCGAAGGGAGAGGCTGTAACCGTGCTATCAGTGAAGTGCTCACTATAACTGATGCATTTGAGTTGGTTAACCACAATGACCTTGAGCATGTATCTGAGTTTGGGACAGAAAGCTTGGACAGTGTCCAAGGTTTTCTAATTGAAGCTTGCAAGAATATTACTAGAATTGTTGACGGTAATTGTACCATGGACCCACTGCTTCCAAATCTACTGCGTCTATACATAAAGAATTTGCCGAAACTGGGAAGCATTTGGAAAGGTCCCGTGCACCCATGGAGCTTATCAAAACTGAGGACTTTGGTGATTGATGATTGCTTCAGCATAGAAGAGTTATTTATTGAACCAGCAAGTATTGCCATCCTCTCAAAACTGAGGAAGCTAGTACTTCTTAATTTGCCAAATTTGACAAGGATTTTCACAAATGTGTCACCGAAGTGGTCCGCCTTAGAGAAGCTTAAGATAAAAAACTGCCCCAGATTAACAGAGTTCCCTTTCTGCAAAGATAACACAGAGAAGCTGAGGAAGCTAACACTTTGTGGTATGCTGAATTTAGAAATGATTTGTGCATACGAGTCATTCGAATGGCCTGCCTTGGAGAAGCTCAAGATATATGGGTGTCGCAGTTTAACAGAGTTACCTTTCAACAAAGATAACGCGAAGAACTTGAATTTCATTGAAGCAGAGGAAGAATGGTAG

Network for GWHGAAZE019706

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	2	169	1.90E-14
PF13855.7	LRR_8	303	358	8.00E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13459	RPS2	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.041
	SRR3591706	second leaf	0.497
	SRR3591707	mature leaf	1.397
	SRR3591708	Shoot apex	0.843
	SRR3591709	Stem	1.345
	SRR3591710	White floral bud	1.244
	SRR3591711	White flower	1.169
	SRR3591712	Green floral bud	0.622
	SRR3591713	Yellow flower	0.297
SRP173429	SRR8316895	Juvenile bud stage	0.066
	SRR8316896	Juvenile bud stage	0.197
	SRR8316897	Juvenile bud stage	0.425
	SRR8316894	Third green stage	0.113
	SRR8316900	Third green stage	0.122
	SRR8316901	Third green stage	0.039
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.661
	SRR8316903	Complete white stage	0.125
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.036
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.078
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.887
SRP132670	SRR6706286	Control	0.039
	SRR6706287	Light intensity 50%	0.211
	SRR6706288	Light intensity 20%	0.121
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.308
	CNS0095593	Slightly white alabastrum(diploid) 2	0.141
	CNS0095594	Slightly white alabastrum(diploid) 3	0.141
	CNS0095595	Whole white alabastrum(diploid) 2	0.419
	CNS0095596	Whole white alabastrum(diploid) 3	0.114
	CNS0095597	Whole white alabastrum(diploid) 4	0.232
	CNS0095598	Silvery flower (diploied) 1	0.913
	CNS0095599	Silvery flower (diploied) 2	0.462
	CNS0095600	Silvery flower (diploied) 3	0.380
	CNS0095601	Golden flower (diploid) 1	1.205
	CNS0095602	Golden flower (diploid) 2	0.893
	CNS0095603	Golden flower (diploid) 3	0.525
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.067
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.071
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.326
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.101
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.088
	CNS0095610	Silvery flower (tetraploid) 1	0.158
	CNS0095611	Silvery flower (tetraploid) 2	0.468
	CNS0095612	Silvery flower (tetraploid) 3	0.339
	CNS0095613	Golden flower (tetraploid) 1	0.043
	CNS0095614	Golden flower (tetraploid) 2	0.039
	CNS0095615	Golden flower (tetraploid) 3	0.044
CRA001975	CRR073297	Stem 1	0.178
	CRR073298	Stem 2	0.020
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.011
	CRR073301	Leaf 2	0.026
	CRR073302	Leaf 3	0.062
	CRR073303	Juvenile bud 1	0.042
	CRR073304	Juvenile bud 2	0.022
	CRR073305	Juvenile bud 3	0.057
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.015
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.188
	CRR073317	Gold flowering 3	0.025
	CRR073318	Tawny withering 1	0.983
	CRR073319	Tawny withering 2	1.107
	CRR073320	Tawny withering 3	1.365