Detail information of GWHGAAZE019696


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007037697.10NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprottr|Q8LKZ8|RPS2_ARATH3E-57Disease resistance protein RPS2
trEMBLtr|A0A061G5B7|A0A061G5B7_THECC0NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313|EMBL:EOY22199.1}
TAIR10AT4G26090.13E-55NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene5826523558270471+
GWHAAZE00000005mRNA5826523558270471+
GWHAAZE00000005exon5826523558265357+
GWHAAZE00000005exon5826676158269892+
GWHAAZE00000005exon5827042458270471+
GWHAAZE00000005CDS5826523558265357+
GWHAAZE00000005CDS5826676158269892+
GWHAAZE00000005CDS5827042458270471+
Transcript Sequence

Network for GWHGAAZE019696

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00931.23NB-ARC2064386.40E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13459RPS2 Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0043531molecular_functionADP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.223
SRR3591706second leaf0.225
SRR3591707mature leaf0.200
SRR3591708Shoot apex0.197
SRR3591709Stem0.545
SRR3591710White floral bud0.090
SRR3591711White flower0.399
SRR3591712Green floral bud0.161
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.516
SRR8316896Juvenile bud stage 1.034
SRR8316897Juvenile bud stage 0.168
SRR8316894Third green stage 0.184
SRR8316900Third green stage 0.347
SRR8316901Third green stage 0.404
SRR8316898Complete white stage 0.290
SRR8316899Complete white stage 0.893
SRR8316903Complete white stage 0.363
SRR8316902Silver flowering stage0.392
SRR8316904Silver flowering stage0.401
SRR8316905Silver flowering stage0.119
SRR8316906Gold flowering stage 0.601
SRR8316907Gold flowering stage 0.379
SRR8316908Gold flowering stage 0.968
SRP132670SRR6706286Control0.358
SRR6706287Light intensity 50%0.471
SRR6706288Light intensity 20%0.320
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.583
CNS0095593Slightly white alabastrum(diploid) 20.482
CNS0095594Slightly white alabastrum(diploid) 30.880
CNS0095595Whole white alabastrum(diploid) 20.609
CNS0095596Whole white alabastrum(diploid) 30.477
CNS0095597Whole white alabastrum(diploid) 40.362
CNS0095598Silvery flower (diploied) 10.608
CNS0095599Silvery flower (diploied) 20.584
CNS0095600Silvery flower (diploied) 30.802
CNS0095601Golden flower (diploid) 11.067
CNS0095602Golden flower (diploid) 21.764
CNS0095603Golden flower (diploid) 31.002
CNS0095604Slightly white alabastrum(tetraploid) 10.836
CNS0095605Slightly white alabastrum(tetraploid) 20.831
CNS0095606Slightly white alabastrum(tetraploid) 31.507
CNS0095607Whole white alabastrum(tetraploid) 11.344
CNS0095608Whole white alabastrum(tetraploid) 20.646
CNS0095609Whole white alabastrum(tetraploid) 30.212
CNS0095610Silvery flower (tetraploid) 10.557
CNS0095611Silvery flower (tetraploid) 20.753
CNS0095612Silvery flower (tetraploid) 32.502
CNS0095613Golden flower (tetraploid) 10.527
CNS0095614Golden flower (tetraploid) 20.640
CNS0095615Golden flower (tetraploid) 30.625
CRA001975CRR073297Stem 10.769
CRR073298Stem 20.513
CRR073299Stem 30.473
CRR073300Leaf 11.002
CRR073301Leaf 20.725
CRR073302Leaf 30.254
CRR073303Juvenile bud 10.601
CRR073304Juvenile bud 20.243
CRR073305Juvenile bud 30.750
CRR073306Third green 10.597
CRR073307Third green 20.786
CRR073308Third green 31.005
CRR073309Second white 11.222
CRR073310Second white 21.392
CRR073311Second white 31.114
CRR073312Silver flowering 11.978
CRR073313Silver flowering 21.048
CRR073314Silver flowering 31.266
CRR073315Gold flowering 10.355
CRR073316Gold flowering 20.910
CRR073317Gold flowering 30.356
CRR073318Tawny withering 17.044
CRR073319Tawny withering 26.178
CRR073320Tawny withering 37.764