Gene detail

Detail information of GWHGAAZE019669

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007037697.1	0	NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q8LKZ8\|RPS2_ARATH	9E-55	Disease resistance protein RPS2
trEMBL	tr\|A0A061G5B7\|A0A061G5B7_THECC	0	NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313\|EMBL:EOY22199.1}
TAIR10	AT4G26090.1	4E-48	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	57319194	57322868	+
GWHAAZE00000005	mRNA	57319194	57322868	+
GWHAAZE00000005	exon	57319194	57322313	+
GWHAAZE00000005	exon	57322821	57322868	+
GWHAAZE00000005	CDS	57319194	57322313	+
GWHAAZE00000005	CDS	57322821	57322868	+

Transcript Sequence
>GWHTAAZE019691 ATGGCTGAAATTTCAGGAGAAGCAGCAGGTATTGATTCCGGGGTGATGTCGTTACAGCCAGTATTACGGGACCCAGTCAACGAAGTTTCAGGGGATATGGAGAAGCTTCACAGAGATTTTACCAACGCAATGCGGAAGTTGTTGCTCAAAAAGGAATGTCATGAGAAAATGTTAGTGTTTTGGAACTCTACAAAGAGACCATCTAAAATCTTCGATGACTGGATTCAAGAAGTGACAAAGTTGGAAAAAGATGATGAAGAAACATATGCCAAATACAAAAGAAAAAAAAACAAGTCGAAGTTTGTACATTATTTTACATATTCAAAACTATGCAAGAAGATGAAAAATCTATTAGAAGTGGCAGATCGCTTGGAGGGCACACAATTGGGAAACATTTTAGTGAGGAAAGAACCAGATCGTGTTGTGGAGATGAAAGGAGCACCCGATATCAAAAAATTCCCCACACTTTCTGAACCACTGGAGAAGATATTGGGTCTGTTAACAAAAGGGAAAATCAAAGGCATTAAAATACATGGGATGATGGGCACAGGGAAGACAACTATAATGCAGAACTTGAACAACCATGAAAAAATTGCTGCTATGTTTGACCTAGTGATTTGGGTGAATGTTTCCATGGAGGAAAACAAAAGGAATTTCAGTCCTGAGCAAATGCAGCAAAGTATTGTGCAAAGACTCAACCTTGATGTCGAAGGCGCCAATGATGACAAAATTGCTGAAAAAATAAGGGGAGTGTTGTGGGATAAGAAGTGTTTGTTACTTCTGGATGGGGTTGAGAAAGATTTCGAATTAAACCAAATTGGGATTGATCTTAATTATGGGAATGGTAGCAAGCTAGTGTTGACAACTAGGATGGTTCATGTTGATGACTCAATTGTGGACCAGGTGGTTAAAGTTGAAAGATTATCCGATGAAGAAGCAATATGTATGTTTAAAAAAGTTCTAGGTCAGTCAAAATGTAACTTTGAGCCGGTAATGGCAGGGGTAGTTAAATGTTGCGACAATCTTCCATTTGTGATAAAAATGATAGCAAGTGCCTTCAAAAAGAAAGAAACAGAGGAGAGCTGGTTCCAAGGACGTAAAAATTTGACAAGGTTTCCTAGAGAGGGCGATTTTGCCATTGATGAAGTGTACAAATATTTAGAATTTTGTTGTGATGAATTGGAAGGAGCTCAAAAGGATTGTTTTTTGTACTGTGCATTATATCCTGAAGAGAGTGACATTGATGCAGATTGGCTATTGGATTGTTGGGCAGCTGAAGATTTGTATGGCACCAACCAAATACGTGACTTTGGGTGTCATATATTGGATGAACTTAAAAAGGTGTCTTTACTGGAGGAAAGTGTGTATGGGCATGTTAAGATGCACAAATTGATTCGGAAAGTGGCATTGGATAAGTTGTTAGCTGATTGTGGACGTAAATATTTGGTGAAAATCAGTAAATCAGTTCAAGATCCCCTGAGTGTGGAAGATTGGAACCAGAAGAATCGAATCTCCTTGGTTGACTATAAATTGACAACCTTACCTGAATGCCCAGATTGTCCGATGCTTTCCACGCTTATTTTACAAAGAAATCGAAGTTTGAAAGAAATTCATAATCTTTTCTTTGAGAATACTGGAAATCTTCGAGTTTTGGACTTGTGTGATACTGGAATCACGTCACTTCCATCTTCAATACGGAAGCTGAAACTTTTGAAAGTCCTATATCTAAATGATTGCACTTGCTTAGTGCAGCTTCCATCTGAAATTGGAGAACTTGAGTCTCTTCAAGTGCTCGATATAAGAGGCTGCGGGGTTGATAGTATACCACTCCGAAATGAGGGTATGCCTGGAACGATCAGCAGGCCTTGTCGAAATTTGATGTTCGGGAAACTGAACCCGGGTCCATGTGCATATCTTACCAACATAGAGAAATTGCGCAATTTGAAGCGCTTGCTGGTTTCCTTCAATAATTTTGGCAATGAAAATGATACATCTCAATTAGATTATTGCAATGCTATTTCCAAGGTTTTTACTACGTTGGAAGAGTTGGTTATTGATGTGAAATCATACAAGCAACGTTGCAGTAAGATGATTAATATGGTGAGAGACAAGGTAGCAGCTACCATGACAAAGCTGACAACTCTCAAGTTTTGCTTTGAAGACGGTGTTGAAGATGTCATAAAAGTGGTGGCTGATACTCCACAAACCTATTATCCCCTAGCAGACGATCTTAAAAGTTTTGTTGAAAAAATAGATGACTCTGCATCTGAATCATTTCAACTTTTCATTGGTTGCTCAATCTCATTGCATCCTCAAATTCCCAAGCCTGACCAATATGGAAGGTATTTGAAATATTGCAATGGGAGAGGCTGTAACCCTACTACTATCGGTGAAGTACTCGCTATAACTGATGCATTTGAGTTGGTTAACCACAATGACCTTGAGCATGTATCTGAGTTTGGGATAGAAAGCTTGTACGAGGTCCAAGGTTTACTAATTGAGGCTTGCAATAGTATTACTGAAATCGTTGATAGTAATTGTACCATGGACGGTCCACTGCTTCCGAAACTACTGCGTTTATACATAAAGAAGTTGCCGAAATTGGGAAGCATTTGGAAAGGTCCCGTGCACCTCTGGAGCTTATCAAAGTTGAGGACTTTGCTGATTGATGATTGCTCTAGCATAGAAGAGTTACTTGTTGAACCTGCAAGTGTTGCTGTCCTACCAAAACTGAGGAAGCTAGTACTTCTTAATTTACCAAATTTGACAAGGATTTGCACAAATGTGTCACCAAAGTGGCCCGACTTAGAGAAGCTTAAGATACAAAACTGCCCCAGATTAATAGAGTTCCCTTTCTGCACAGATAACACAGAGAAGCTGAGGAAGCTAACACTTCAGGGTATGCCGAATTTAGAAATGATTTGTGCATACGAGTCATTGGAATGGCCTGCCTTGGAGAAGCTCAAGATATATGGTTGTTGCAGTTTAACGAAGTTACCTTTCAACAAAGATAACGCGAAGAACTTGAATTCCATTGAAGCAGAGGGAAAATGGTGGGATGCATTGCTATGGCAAGACTGCGCGGTGAAAGTGCGGCTCCAGCCTCACTGCTCCCTACAGCCGATTGACCAAGATGCAACCACCTACACTGGAAACGGTGGCCCTTAA

Network for GWHGAAZE019669

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	159	392	2.00E-36
PF13855.7	LRR_8	523	579	1.30E-06

Protein Sequence

>GWHPAAZE019680
MAEISGEAAGIDSGVMSLQPVLRDPVNEVSGDMEKLHRDFTNAMRKLLLKKECHEKMLVFWNSTKRPSKIFDDWIQEVTKLEKDDEETYAKYKRKKNKSKFVHYFTYSKLCKKMKNLLEVADRLEGTQLGNILVRKEPDRVVEMKGAPDIKKFPTLSEPLEKILGLLTKGKIKGIKIHGMMGTGKTTIMQNLNNHEKIAAMFDLVIWVNVSMEENKRNFSPEQMQQSIVQRLNLDVEGANDDKIAEKIRGVLWDKKCLLLLDGVEKDFELNQIGIDLNYGNGSKLVLTTRMVHVDDSIVDQVVKVERLSDEEAICMFKKVLGQSKCNFEPVMAGVVKCCDNLPFVIKMIASAFKKKETEESWFQGRKNLTRFPREGDFAIDEVYKYLEFCCDELEGAQKDCFLYCALYPEESDIDADWLLDCWAAEDLYGTNQIRDFGCHILDELKKVSLLEESVYGHVKMHKLIRKVALDKLLADCGRKYLVKISKSVQDPLSVEDWNQKNRISLVDYKLTTLPECPDCPMLSTLILQRNRSLKEIHNLFFENTGNLRVLDLCDTGITSLPSSIRKLKLLKVLYLNDCTCLVQLPSEIGELESLQVLDIRGCGVDSIPLRNEGMPGTISRPCRNLMFGKLNPGPCAYLTNIEKLRNLKRLLVSFNNFGNENDTSQLDYCNAISKVFTTLEELVIDVKSYKQRCSKMINMVRDKVAATMTKLTTLKFCFEDGVEDVIKVVADTPQTYYPLADDLKSFVEKIDDSASESFQLFIGCSISLHPQIPKPDQYGRYLKYCNGRGCNPTTIGEVLAITDAFELVNHNDLEHVSEFGIESLYEVQGLLIEACNSITEIVDSNCTMDGPLLPKLLRLYIKKLPKLGSIWKGPVHLWSLSKLRTLLIDDCSSIEELLVEPASVAVLPKLRKLVLLNLPNLTRICTNVSPKWPDLEKLKIQNCPRLIEFPFCTDNTEKLRKLTLQGMPNLEMICAYESLEWPALEKLKIYGCCSLTKLPFNKDNAKNLNSIEAEGKWWDALLWQDCAVKVRLQPHCSLQPIDQDATTYTGNGGP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13459	RPS2	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.243
	SRR3591706	second leaf	2.148
	SRR3591707	mature leaf	3.312
	SRR3591708	Shoot apex	3.630
	SRR3591709	Stem	6.916
	SRR3591710	White floral bud	1.105
	SRR3591711	White flower	1.644
	SRR3591712	Green floral bud	0.802
	SRR3591713	Yellow flower	0.364
SRP173429	SRR8316895	Juvenile bud stage	5.542
	SRR8316896	Juvenile bud stage	5.912
	SRR8316897	Juvenile bud stage	2.533
	SRR8316894	Third green stage	2.430
	SRR8316900	Third green stage	5.202
	SRR8316901	Third green stage	5.784
	SRR8316898	Complete white stage	1.561
	SRR8316899	Complete white stage	11.532
	SRR8316903	Complete white stage	2.946
	SRR8316902	Silver flowering stage	2.172
	SRR8316904	Silver flowering stage	3.781
	SRR8316905	Silver flowering stage	1.791
	SRR8316906	Gold flowering stage	7.694
	SRR8316907	Gold flowering stage	4.643
	SRR8316908	Gold flowering stage	6.956
SRP132670	SRR6706286	Control	3.399
	SRR6706287	Light intensity 50%	3.513
	SRR6706288	Light intensity 20%	3.768
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.620
	CNS0095593	Slightly white alabastrum(diploid) 2	3.865
	CNS0095594	Slightly white alabastrum(diploid) 3	3.306
	CNS0095595	Whole white alabastrum(diploid) 2	3.893
	CNS0095596	Whole white alabastrum(diploid) 3	2.058
	CNS0095597	Whole white alabastrum(diploid) 4	3.395
	CNS0095598	Silvery flower (diploied) 1	7.727
	CNS0095599	Silvery flower (diploied) 2	6.043
	CNS0095600	Silvery flower (diploied) 3	7.634
	CNS0095601	Golden flower (diploid) 1	5.863
	CNS0095602	Golden flower (diploid) 2	8.870
	CNS0095603	Golden flower (diploid) 3	8.310
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.610
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.609
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.783
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.957
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.089
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.895
	CNS0095610	Silvery flower (tetraploid) 1	6.527
	CNS0095611	Silvery flower (tetraploid) 2	5.964
	CNS0095612	Silvery flower (tetraploid) 3	4.328
	CNS0095613	Golden flower (tetraploid) 1	2.201
	CNS0095614	Golden flower (tetraploid) 2	5.886
	CNS0095615	Golden flower (tetraploid) 3	2.793
CRA001975	CRR073297	Stem 1	5.920
	CRR073298	Stem 2	5.156
	CRR073299	Stem 3	4.392
	CRR073300	Leaf 1	5.711
	CRR073301	Leaf 2	3.962
	CRR073302	Leaf 3	4.275
	CRR073303	Juvenile bud 1	4.781
	CRR073304	Juvenile bud 2	4.263
	CRR073305	Juvenile bud 3	5.226
	CRR073306	Third green 1	0.676
	CRR073307	Third green 2	1.055
	CRR073308	Third green 3	0.901
	CRR073309	Second white 1	2.083
	CRR073310	Second white 2	2.724
	CRR073311	Second white 3	2.056
	CRR073312	Silver flowering 1	1.380
	CRR073313	Silver flowering 2	1.714
	CRR073314	Silver flowering 3	0.986
	CRR073315	Gold flowering 1	3.950
	CRR073316	Gold flowering 2	8.965
	CRR073317	Gold flowering 3	3.076
	CRR073318	Tawny withering 1	9.042
	CRR073319	Tawny withering 2	9.999
	CRR073320	Tawny withering 3	9.187