Gene detail

Detail information of GWHGAAZE019412

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009766156.1	0	PREDICTED: pectinesterase 2-like [Nicotiana sylvestris]
Swissprot	tr\|O04887\|PME2_CITSI	0	Pectinesterase 2 (Precursor)
trEMBL	tr\|A0A068VJU0\|A0A068VJU0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1911 {ECO:0000313\|EMBL:CDP20872.1}
TAIR10	AT2G45220.1	6E-117	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	41461633	41464181	+
GWHAAZE00000005	mRNA	41461633	41464181	+
GWHAAZE00000005	exon	41461633	41462059	+
GWHAAZE00000005	exon	41462234	41462503	+
GWHAAZE00000005	exon	41463493	41464181	+
GWHAAZE00000005	CDS	41461633	41462059	+
GWHAAZE00000005	CDS	41462234	41462503	+
GWHAAZE00000005	CDS	41463493	41464181	+

Transcript Sequence
>GWHTAAZE019434 ATGGCTCTTCAACTTTTCACACCATTTCTCTTTCTCTCTCTCTTCCTCTTTCTCTCTCCTACCATTTTTGCTTACACACAACACGACATTAAATCATGGTGCACCCAAACACCACACCCGAAACCATGTGAGTACTTCTTGGCCCAAAACCCTAACTATGGTCCGATCAAACAAAAACCCGACTTCTTAAAAGCATCGCTAAAGCTAGCCCTAGACAGGGCTTTGAACGCAAATGTCAAGACCAAAACCCTTGGCTTGAAATGTCGAAACGAGCAAGAAAAAGCTGCTTGGGCAGATTGTTTAGAGCTCTACGAGGACACAGTCTCGAGGCTCAACAAAACCGCGGACCCTTTGACCAAGTGCTCTCATGCCGACTCGCAAACCTGGCTCAGCTCGGCCCTAACCAACCTCGAGACCTGTCGAGCGGGTTCGCCAGCAGCTCAGGCAAACGTGGTGGTGGCTCAAGACGGGTCGGGGAATTATAAGACAGTGGGGGAGGCGGTGGCAGCGGCGGGGAGGAGGGCAGGGAGTGGGAGGTATGTGATATATATTAAGGCAGGGACTTACCGGGAGAATGTGGAGGTGGGTTCAAAGTTGAAGAATATTATGTTTTTGGGTGATGGTATTGGGAGGACTATTATAACCGGTAGTAAAAGTGTTGGTGGTGGCACCACCACCTTCAAATCGGCCACCGTTGCTGTCGTGGGAGACGGATTCATAGCCCGGGGCATAACATTCCGCAACACCGCGGGCCCACAGAACCACCAGGCCGTGGCCCTCCGGTCCGGCTCCGACCTCTCGGTATTTTACCAATGTTCCTTCGAAGGTTATCAAGACACTCTCTACGTTCACTCAGACCGCCAGTTTTATAAAAACTGTGATATTTACGGTACAGTCGACTTCATTTTTGGCAACGCTGCCGTAGTTTTCCAAAATTGCAATATTTACCCCCGCAATCCGCCCAACAAAACCAACACCATCACAGCCCAGGGCCGAACCGACGCAAATCAGAACACGGGTATTTCGATTCACAACTGTCGGGTCACCCCAGCCTCGGATCTCAGATCGAATCAAGGGTCCGTTAGGACTTATTTGGGTCGGCCCTGGAAGCAGTATTCGAGGGTGGTGTTTATGCAGACTAATATGGATAGTTTCATTGACCCGGCAGGTTGGTTGCCATGGAGTGGGAATTTTGCTTTAAGTACTTTGTATTATGGGGAGTATATGAATACTGGTCCGGGTTCAGCTACAGGTAGAAGGGTGAAGTGGGGCGGGTACCGGGTTATAACGAGTGCAGCGGAGGCGGGGAGGTTTACAGTTGGGAGTTTTATTGCAGGGGGGTCTTGGTTGCCGGCTACCAATGTGCCATTTACTGCAGGGCTTTGA

Network for GWHGAAZE019412

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	30	145	1.40E-23
PF01095.20	Pectinesterase	150	446	1.60E-143

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0004857	molecular_function	enzyme inhibitor activity
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.043
	SRR3591710	White floral bud	0.026
	SRR3591711	White flower	1.660
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	93.714
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.048
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.011
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.333
	SRR8316899	Complete white stage	0.026
	SRR8316903	Complete white stage	0.142
	SRR8316902	Silver flowering stage	0.220
	SRR8316904	Silver flowering stage	0.424
	SRR8316905	Silver flowering stage	0.332
	SRR8316906	Gold flowering stage	33.921
	SRR8316907	Gold flowering stage	62.709
	SRR8316908	Gold flowering stage	12.578
SRP132670	SRR6706286	Control	0.213
	SRR6706287	Light intensity 50%	0.009
	SRR6706288	Light intensity 20%	0.017
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.147
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.021
	CNS0095595	Whole white alabastrum(diploid) 2	0.070
	CNS0095596	Whole white alabastrum(diploid) 3	0.039
	CNS0095597	Whole white alabastrum(diploid) 4	0.148
	CNS0095598	Silvery flower (diploied) 1	0.621
	CNS0095599	Silvery flower (diploied) 2	1.351
	CNS0095600	Silvery flower (diploied) 3	3.032
	CNS0095601	Golden flower (diploid) 1	5.080
	CNS0095602	Golden flower (diploid) 2	132.705
	CNS0095603	Golden flower (diploid) 3	124.053
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.070
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.037
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.045
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.021
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.204
	CNS0095610	Silvery flower (tetraploid) 1	8.477
	CNS0095611	Silvery flower (tetraploid) 2	22.201
	CNS0095612	Silvery flower (tetraploid) 3	19.065
	CNS0095613	Golden flower (tetraploid) 1	97.989
	CNS0095614	Golden flower (tetraploid) 2	54.000
	CNS0095615	Golden flower (tetraploid) 3	96.087
CRA001975	CRR073297	Stem 1	0.391
	CRR073298	Stem 2	0.326
	CRR073299	Stem 3	0.282
	CRR073300	Leaf 1	0.153
	CRR073301	Leaf 2	0.400
	CRR073302	Leaf 3	0.221
	CRR073303	Juvenile bud 1	0.325
	CRR073304	Juvenile bud 2	0.362
	CRR073305	Juvenile bud 3	0.181
	CRR073306	Third green 1	0.413
	CRR073307	Third green 2	0.150
	CRR073308	Third green 3	0.288
	CRR073309	Second white 1	27.809
	CRR073310	Second white 2	43.522
	CRR073311	Second white 3	49.379
	CRR073312	Silver flowering 1	604.859
	CRR073313	Silver flowering 2	1135.415
	CRR073314	Silver flowering 3	1134.341
	CRR073315	Gold flowering 1	0.040
	CRR073316	Gold flowering 2	0.163
	CRR073317	Gold flowering 3	0.112
	CRR073318	Tawny withering 1	0.202
	CRR073319	Tawny withering 2	0.173
	CRR073320	Tawny withering 3	0.151