Gene detail

Detail information of GWHGAAZE019410

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280446.1	0	PREDICTED: pectinesterase 2 [Vitis vinifera]
Swissprot	tr\|O04887\|PME2_CITSI	0	Pectinesterase 2 (Precursor)
trEMBL	tr\|F6I390\|F6I390_VITVI	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT2G45220.1	8E-160	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	41368584	41370948	+
GWHAAZE00000005	mRNA	41368584	41370948	+
GWHAAZE00000005	exon	41368584	41369457	+
GWHAAZE00000005	exon	41370527	41370948	+
GWHAAZE00000005	CDS	41368584	41369457	+
GWHAAZE00000005	CDS	41370527	41370948	+

Transcript Sequence
>GWHTAAZE019432 ATGGCTCTTCAACTTCTCACACCATTTCTCTTTCTCTCTCTCTTCCTCTTTCTCTCTCCTACCATTTTTGCTTACACACAACACGACATTAAATCATGGTGCACCCAAACACCACACCCGAAACCATGTGAGTACTTCTTGACCCAAAACCCTAACTATGGTCCGATCAAACAAAAACCCGACTTCTTAAAAGCATCGCTAAAGCTAGCCCTAGACAGGGCTTTGAACGCAAATGTCAAGACCAAAACCCTTGGCTTGAAATGTCGAAACGAGCAAGAAAAAGCTGCTTGGGCAGATTGTTTAGAGCTCTACGAGGACACAGTCTCGAGGCTCAACAAAACCGCGGACCCTTTGACCAAGTGCTCTCATGCCGACTCGCAAACCTGGCTCAGCTCGGCCCTAACCAACCTCGAGACCTGTCGAGCCGGGTTCTTGGAGCTAGGGGTGGGTGATTACCTATTGCCCTTGATGTCCAACAATGTGTCGATGCTTATTAGCAACACTTTGGCAATGAACAAGGGTAATGGGTCGGATAATGGGCCGGGTTATAAAAATGGGTTCCCGAGTTGGGTCCGACCTGGTGACCGGAAACTTTTGCAGGCTGGTTCGCCAGCAGCTCAGGCAAACGTGGTGGTGGCTCAAGACGGGTCGGGGAATTATAAGACAGTGGGGGAGGCGGTGTCAGCGGCGGGGAAGAGGGCGGGGAGTGGGAGGTATGTGATATATATTAAGGCAGGGACTTACCGGGAGAATGTGGAGGTGGGTTCAAAGTTGAAGAATATTATGTTTTTGGGTGATGGTATTGGGAGGACTATTATAACCGGTAGTAAAAGTGTTGTTGGTGGCACCACCACCTTCAAATCGGCCACCGTTGCTGTCGTGGGAGACGGATTCATAGCCCGTGGCATAACATTCCGCAACACTGCGGGCCCACAGAACCACCAGGCCGTGGCCCTCCGGTCCGGCTCCGACCTCTCGGTATTTTACCAATGTTCCTTCGAAGGCTATCAAGACACCCTCTACGTTCACTCAGACCGCCAATTTTATAAAAACTGTGATATTTACGGTACAGTCGACTTCATTTTTGGCAACGCTGCCGTAGTTTTCCAAAATTGCAATATTTACCCCCGCAACCCGCCCAACAAAACCAACACCATCACAGCCCAGGGCCGAACCGACGCAAATCAGAACACAGGTATTTCGATTCACAACTGTCGGGTCACGCCAGCCTCGGATCTCAGATCGAATCAAGGGTCCGTTAGGACTTATTTGGGTCGGCCCTGGAAGCAGTATTAG

Network for GWHGAAZE019410

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	30	171	3.30E-28
PF01095.20	Pectinesterase	209	431	3.10E-106

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0004857	molecular_function	enzyme inhibitor activity
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.061
	SRR3591711	White flower	5.060
	SRR3591712	Green floral bud	0.010
	SRR3591713	Yellow flower	247.002
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.066
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.502
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.238
	SRR8316902	Silver flowering stage	0.306
	SRR8316904	Silver flowering stage	0.384
	SRR8316905	Silver flowering stage	0.199
	SRR8316906	Gold flowering stage	38.094
	SRR8316907	Gold flowering stage	69.385
	SRR8316908	Gold flowering stage	25.487
SRP132670	SRR6706286	Control	0.271
	SRR6706287	Light intensity 50%	0.019
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.038
	CNS0095596	Whole white alabastrum(diploid) 3	0.117
	CNS0095597	Whole white alabastrum(diploid) 4	0.121
	CNS0095598	Silvery flower (diploied) 1	0.389
	CNS0095599	Silvery flower (diploied) 2	0.278
	CNS0095600	Silvery flower (diploied) 3	1.770
	CNS0095601	Golden flower (diploid) 1	1.495
	CNS0095602	Golden flower (diploid) 2	118.790
	CNS0095603	Golden flower (diploid) 3	103.216
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.024
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	3.264
	CNS0095611	Silvery flower (tetraploid) 2	7.014
	CNS0095612	Silvery flower (tetraploid) 3	5.117
	CNS0095613	Golden flower (tetraploid) 1	17.566
	CNS0095614	Golden flower (tetraploid) 2	17.728
	CNS0095615	Golden flower (tetraploid) 3	41.517
CRA001975	CRR073297	Stem 1	0.309
	CRR073298	Stem 2	0.263
	CRR073299	Stem 3	0.343
	CRR073300	Leaf 1	0.107
	CRR073301	Leaf 2	0.319
	CRR073302	Leaf 3	0.243
	CRR073303	Juvenile bud 1	0.236
	CRR073304	Juvenile bud 2	0.220
	CRR073305	Juvenile bud 3	0.312
	CRR073306	Third green 1	0.221
	CRR073307	Third green 2	0.165
	CRR073308	Third green 3	0.261
	CRR073309	Second white 1	22.093
	CRR073310	Second white 2	39.511
	CRR073311	Second white 3	46.052
	CRR073312	Silver flowering 1	667.470
	CRR073313	Silver flowering 2	1164.296
	CRR073314	Silver flowering 3	1246.882
	CRR073315	Gold flowering 1	0.039
	CRR073316	Gold flowering 2	0.170
	CRR073317	Gold flowering 3	0.159
	CRR073318	Tawny withering 1	0.619
	CRR073319	Tawny withering 2	0.822
	CRR073320	Tawny withering 3	0.127