Detail information of GWHGAAZE019380


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP17187.10unnamed protein product [Coffea canephora]
trEMBLtr|A0A068V9L2|A0A068V9L2_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_148 {ECO:0000313|EMBL:CDP17187.1}
TAIR10AT5G27730.11E-167Protein of unknown function (DUF1624)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3988646439893833-
GWHAAZE00000005mRNA3988646439893833-
GWHAAZE00000005exon3988646439886610-
GWHAAZE00000005exon3988750439887647-
GWHAAZE00000005exon3988802739888118-
GWHAAZE00000005exon3988819939888280-
GWHAAZE00000005exon3988852639888592-
GWHAAZE00000005exon3989033939890430-
GWHAAZE00000005exon3989071939890835-
GWHAAZE00000005exon3989136439891481-
GWHAAZE00000005exon3989158139891696-
GWHAAZE00000005exon3989179739891873-
GWHAAZE00000005exon3989349239893573-
GWHAAZE00000005exon3989369939893833-
GWHAAZE00000005CDS3989369939893833-
GWHAAZE00000005CDS3989349239893573-
GWHAAZE00000005CDS3989179739891873-
GWHAAZE00000005CDS3989158139891696-
GWHAAZE00000005CDS3989136439891481-
GWHAAZE00000005CDS3989071939890835-
GWHAAZE00000005CDS3989033939890430-
GWHAAZE00000005CDS3988852639888592-
GWHAAZE00000005CDS3988819939888280-
GWHAAZE00000005CDS3988802739888118-
GWHAAZE00000005CDS3988750439887647-
GWHAAZE00000005CDS3988646439886610-
Transcript Sequence

Network for GWHGAAZE019380

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10532HGSNAT Metabolic pathways map01100
Glycosaminoglycan degradationmap00531
Lysosomemap04142

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.358
SRR3591706second leaf5.640
SRR3591707mature leaf10.060
SRR3591708Shoot apex5.606
SRR3591709Stem6.608
SRR3591710White floral bud5.472
SRR3591711White flower4.261
SRR3591712Green floral bud4.806
SRR3591713Yellow flower1.679
SRP173429 SRR8316895Juvenile bud stage 5.238
SRR8316896Juvenile bud stage 5.231
SRR8316897Juvenile bud stage 1.958
SRR8316894Third green stage 2.326
SRR8316900Third green stage 5.702
SRR8316901Third green stage 6.298
SRR8316898Complete white stage 1.619
SRR8316899Complete white stage 9.138
SRR8316903Complete white stage 3.101
SRR8316902Silver flowering stage0.607
SRR8316904Silver flowering stage1.494
SRR8316905Silver flowering stage0.295
SRR8316906Gold flowering stage 0.990
SRR8316907Gold flowering stage 1.376
SRR8316908Gold flowering stage 1.167
SRP132670SRR6706286Control3.720
SRR6706287Light intensity 50%3.500
SRR6706288Light intensity 20%4.663
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.726
CNS0095593Slightly white alabastrum(diploid) 26.012
CNS0095594Slightly white alabastrum(diploid) 35.166
CNS0095595Whole white alabastrum(diploid) 25.029
CNS0095596Whole white alabastrum(diploid) 32.784
CNS0095597Whole white alabastrum(diploid) 43.195
CNS0095598Silvery flower (diploied) 110.096
CNS0095599Silvery flower (diploied) 210.452
CNS0095600Silvery flower (diploied) 33.070
CNS0095601Golden flower (diploid) 19.032
CNS0095602Golden flower (diploid) 26.520
CNS0095603Golden flower (diploid) 34.481
CNS0095604Slightly white alabastrum(tetraploid) 16.787
CNS0095605Slightly white alabastrum(tetraploid) 25.582
CNS0095606Slightly white alabastrum(tetraploid) 38.608
CNS0095607Whole white alabastrum(tetraploid) 13.034
CNS0095608Whole white alabastrum(tetraploid) 21.796
CNS0095609Whole white alabastrum(tetraploid) 34.983
CNS0095610Silvery flower (tetraploid) 12.842
CNS0095611Silvery flower (tetraploid) 25.439
CNS0095612Silvery flower (tetraploid) 32.050
CNS0095613Golden flower (tetraploid) 11.163
CNS0095614Golden flower (tetraploid) 22.671
CNS0095615Golden flower (tetraploid) 30.180
CRA001975CRR073297Stem 13.013
CRR073298Stem 22.939
CRR073299Stem 33.948
CRR073300Leaf 13.534
CRR073301Leaf 23.310
CRR073302Leaf 32.708
CRR073303Juvenile bud 12.269
CRR073304Juvenile bud 23.204
CRR073305Juvenile bud 33.350
CRR073306Third green 10.250
CRR073307Third green 20.217
CRR073308Third green 30.178
CRR073309Second white 10.001
CRR073310Second white 20.389
CRR073311Second white 30.168
CRR073312Silver flowering 10.050
CRR073313Silver flowering 20.908
CRR073314Silver flowering 30.023
CRR073315Gold flowering 15.986
CRR073316Gold flowering 27.255
CRR073317Gold flowering 35.430
CRR073318Tawny withering 16.633
CRR073319Tawny withering 25.357
CRR073320Tawny withering 32.805