Gene detail

Detail information of GWHGAAZE019346

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008437474.1	3.4816E-177	PREDICTED: putative alpha-L-fucosidase 1 isoform X2 [Cucumis melo]
Swissprot	tr\|Q8GW72\|FUCO1_ARATH	8E-103	Alpha-L-fucosidase 1 (Precursor)
trEMBL	tr\|A0A068UCC3\|A0A068UCC3_COFCA	4E-143	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05278.1}
TAIR10	AT2G28100.1	2E-86	alpha-L-fucosidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	38912464	38916546	-
GWHAAZE00000005	mRNA	38912464	38916546	-
GWHAAZE00000005	exon	38912464	38912861	-
GWHAAZE00000005	exon	38913076	38913146	-
GWHAAZE00000005	exon	38915723	38915962	-
GWHAAZE00000005	exon	38916158	38916546	-
GWHAAZE00000005	CDS	38916158	38916546	-
GWHAAZE00000005	CDS	38915723	38915962	-
GWHAAZE00000005	CDS	38913076	38913146	-
GWHAAZE00000005	CDS	38912464	38912861	-

Transcript Sequence
>GWHTAAZE019368 ATGTTCCTTCACTTTGGTGTCAACACATTCACGGACTCCGAGTGGGGCACTGGTCAAGAAAACCCGGCTATATTCAACCCGGTTGGACTTGATGCCAACCAGTGGGTCGACACGGCAAGTCAACTCGGCGTCAATCTTGTGATCCTCACAGCAAAACATCACGACGGATTCTGCTTGTGGCCGTCAAAATACACTGACCATTCGGTTATCGGAAGCCCGTGGAAAAATGGCAAAGGTGACGTCGTTCAAGAACTTGTTAATGCTGCAAAGCGCCGCGGAGTAGACGTGGGCCTTTATCTCTCGCCCTGGGATCGCCATGATGGAAGATACGGCCAAACTAAAGAGTACAATGAGTACTATTTAGCTCAACTACAAGAACTTCTCAATAAATATGGAAGTGTCAAAGAAATATGGTTTGATGGAGCGAAGGGTTCGAATGCGCCGAACATGTCGTATTATTTCAGTGATTGGTTCTCAATGGTGAAGGAATTGCAGAGTACAATCAATATTTTTTCGAATGCAGGACCGGATGTTAGGTGGGTCGGAGATGAGAAGGGGTTCGCCGGAAGTACTAGTTGGTCCACAATTAATCGGACGTCCCTATCAATCGGAAATGGAATTATTGTTGACTATCTCAACACCGGTGATCCGAAAGGGACCGATTGGATACCAGCAGAGTGCGATGTTTCTGTCCGAACAGCGAGTAGCCAACGAGGAGGCGAAAATGGTGGGTTCGGACCTGAAAACGTGCTAGACAATGAGCACTTGTGGACATATTGGGCTCCGAGTGATGAAAATGAGGATGACCACTGGATCGAGTTGAGGGCGAAGTCGAACAGAGGGCTGAGATTCAATGTGATCAGGATTCAAGAGGCGATTGGGCTAGGACAGAGGATCATATGGCACGAGATTTACGTCGACGGGGCCCGGGTCGCGAAGGGGACCACAGTAGGGTACAAGAAGCTTCACAGGCTTGCCAAGGGAGAGGTCCATGGGAATGGCGTGAGGGTCCGAATCATGGGATCGAGAGGGGGGATTCCTTTAATATCATCCATTGGTCTGCATTTTGATCCCTTTTGGCACCCAAATGGGCACTAA

Network for GWHGAAZE019346

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01120.18	Alpha_L_fucos	23	174	1.80E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01206	FUCA	Other glycan degradation	map00511
K01206	FUCA	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004560	molecular_function	alpha-L-fucosidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.315
	SRR3591706	second leaf	1.524
	SRR3591707	mature leaf	0.744
	SRR3591708	Shoot apex	1.630
	SRR3591709	Stem	0.238
	SRR3591710	White floral bud	3.148
	SRR3591711	White flower	0.962
	SRR3591712	Green floral bud	4.623
	SRR3591713	Yellow flower	0.343
SRP173429	SRR8316895	Juvenile bud stage	1.771
	SRR8316896	Juvenile bud stage	0.878
	SRR8316897	Juvenile bud stage	0.446
	SRR8316894	Third green stage	1.110
	SRR8316900	Third green stage	3.363
	SRR8316901	Third green stage	2.926
	SRR8316898	Complete white stage	0.616
	SRR8316899	Complete white stage	2.769
	SRR8316903	Complete white stage	0.560
	SRR8316902	Silver flowering stage	0.119
	SRR8316904	Silver flowering stage	0.252
	SRR8316905	Silver flowering stage	0.184
	SRR8316906	Gold flowering stage	0.126
	SRR8316907	Gold flowering stage	0.196
	SRR8316908	Gold flowering stage	0.161
SRP132670	SRR6706286	Control	4.918
	SRR6706287	Light intensity 50%	4.830
	SRR6706288	Light intensity 20%	5.370
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.004
	CNS0095593	Slightly white alabastrum(diploid) 2	5.608
	CNS0095594	Slightly white alabastrum(diploid) 3	3.662
	CNS0095595	Whole white alabastrum(diploid) 2	4.885
	CNS0095596	Whole white alabastrum(diploid) 3	6.623
	CNS0095597	Whole white alabastrum(diploid) 4	4.082
	CNS0095598	Silvery flower (diploied) 1	2.495
	CNS0095599	Silvery flower (diploied) 2	5.959
	CNS0095600	Silvery flower (diploied) 3	0.939
	CNS0095601	Golden flower (diploid) 1	3.050
	CNS0095602	Golden flower (diploid) 2	1.513
	CNS0095603	Golden flower (diploid) 3	1.221
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.409
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.918
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.207
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.834
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.547
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.871
	CNS0095610	Silvery flower (tetraploid) 1	0.534
	CNS0095611	Silvery flower (tetraploid) 2	1.571
	CNS0095612	Silvery flower (tetraploid) 3	1.090
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.138
	CNS0095615	Golden flower (tetraploid) 3	0.129
CRA001975	CRR073297	Stem 1	1.984
	CRR073298	Stem 2	1.365
	CRR073299	Stem 3	2.446
	CRR073300	Leaf 1	2.719
	CRR073301	Leaf 2	4.703
	CRR073302	Leaf 3	4.498
	CRR073303	Juvenile bud 1	3.145
	CRR073304	Juvenile bud 2	2.159
	CRR073305	Juvenile bud 3	2.288
	CRR073306	Third green 1	0.980
	CRR073307	Third green 2	2.766
	CRR073308	Third green 3	1.001
	CRR073309	Second white 1	0.283
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.119
	CRR073312	Silver flowering 1	0.079
	CRR073313	Silver flowering 2	0.203
	CRR073314	Silver flowering 3	1.169
	CRR073315	Gold flowering 1	1.835
	CRR073316	Gold flowering 2	2.523
	CRR073317	Gold flowering 3	3.578
	CRR073318	Tawny withering 1	0.258
	CRR073319	Tawny withering 2	0.162
	CRR073320	Tawny withering 3	0.134