Detail information of GWHGAAZE019215


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009759814.14.10289E-23PREDICTED: syntaxin-43-like [Nicotiana sylvestris]
Swissprottr|O65359|SYP41_ARATH1E-23Syntaxin-41
trEMBLtr|M1CAW2|M1CAW2_SOLTU5E-24Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400063613}
TAIR10AT5G26980.24E-16syntaxin of plants 41

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3422129534221486-
GWHAAZE00000005mRNA3422129534221486-
GWHAAZE00000005exon3422129534221486-
GWHAAZE00000005CDS3422129534221486-
Transcript Sequence

Network for GWHGAAZE019215

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08489STX16 SNARE interactions in vesicular transport map04130

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.036
SRR3591706second leaf1.639
SRR3591707mature leaf2.310
SRR3591708Shoot apex4.644
SRR3591709Stem5.619
SRR3591710White floral bud7.065
SRR3591711White flower5.315
SRR3591712Green floral bud5.814
SRR3591713Yellow flower4.252
SRP173429 SRR8316895Juvenile bud stage 2.990
SRR8316896Juvenile bud stage 3.121
SRR8316897Juvenile bud stage 0.845
SRR8316894Third green stage 2.330
SRR8316900Third green stage 7.036
SRR8316901Third green stage 6.898
SRR8316898Complete white stage 5.270
SRR8316899Complete white stage 8.162
SRR8316903Complete white stage 11.088
SRR8316902Silver flowering stage2.130
SRR8316904Silver flowering stage6.536
SRR8316905Silver flowering stage2.796
SRR8316906Gold flowering stage 9.706
SRR8316907Gold flowering stage 9.368
SRR8316908Gold flowering stage 4.453
SRP132670SRR6706286Control3.428
SRR6706287Light intensity 50%3.000
SRR6706288Light intensity 20%3.988
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.231
CNS0095593Slightly white alabastrum(diploid) 22.563
CNS0095594Slightly white alabastrum(diploid) 33.695
CNS0095595Whole white alabastrum(diploid) 20.606
CNS0095596Whole white alabastrum(diploid) 32.817
CNS0095597Whole white alabastrum(diploid) 41.588
CNS0095598Silvery flower (diploied) 13.983
CNS0095599Silvery flower (diploied) 22.198
CNS0095600Silvery flower (diploied) 37.383
CNS0095601Golden flower (diploid) 13.081
CNS0095602Golden flower (diploid) 26.187
CNS0095603Golden flower (diploid) 34.981
CNS0095604Slightly white alabastrum(tetraploid) 12.619
CNS0095605Slightly white alabastrum(tetraploid) 23.761
CNS0095606Slightly white alabastrum(tetraploid) 37.155
CNS0095607Whole white alabastrum(tetraploid) 12.112
CNS0095608Whole white alabastrum(tetraploid) 21.272
CNS0095609Whole white alabastrum(tetraploid) 32.841
CNS0095610Silvery flower (tetraploid) 17.686
CNS0095611Silvery flower (tetraploid) 25.199
CNS0095612Silvery flower (tetraploid) 312.178
CNS0095613Golden flower (tetraploid) 13.106
CNS0095614Golden flower (tetraploid) 26.582
CNS0095615Golden flower (tetraploid) 36.941
CRA001975CRR073297Stem 14.817
CRR073298Stem 26.126
CRR073299Stem 33.590
CRR073300Leaf 14.283
CRR073301Leaf 24.303
CRR073302Leaf 31.484
CRR073303Juvenile bud 13.153
CRR073304Juvenile bud 22.269
CRR073305Juvenile bud 32.554
CRR073306Third green 12.892
CRR073307Third green 22.166
CRR073308Third green 33.892
CRR073309Second white 15.228
CRR073310Second white 22.047
CRR073311Second white 34.343
CRR073312Silver flowering 11.792
CRR073313Silver flowering 26.257
CRR073314Silver flowering 32.019
CRR073315Gold flowering 11.493
CRR073316Gold flowering 21.522
CRR073317Gold flowering 30.909
CRR073318Tawny withering 12.168
CRR073319Tawny withering 20.747
CRR073320Tawny withering 31.786