Detail information of GWHGAAZE019206


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP23586.11.83733E-28hypothetical protein JCGZ_23419 [Jatropha curcas]
Swissprottr|Q9ZUN0|FB113_ARATH6E-10Putative F-box protein At2g19630
trEMBLtr|A0A067JI10|A0A067JI10_JATCU7E-29Uncharacterized protein {ECO:0000313|EMBL:KDP23586.1}
TAIR10AT2G19630.10.000000003F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3384851133849812+
GWHAAZE00000005mRNA3384851133849812+
GWHAAZE00000005exon3384851133848983+
GWHAAZE00000005exon3384920933849812+
GWHAAZE00000005CDS3384851133848983+
GWHAAZE00000005CDS3384920933849812+
Transcript Sequence

Network for GWHGAAZE019206

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box38745.10E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.247
SRR3591706second leaf0.142
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.099
SRR3591709Stem0.000
SRR3591710White floral bud0.024
SRR3591711White flower0.029
SRR3591712Green floral bud0.050
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.313
SRR8316896Juvenile bud stage 0.115
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.010
SRR8316901Third green stage 0.069
SRR8316898Complete white stage 0.004
SRR8316899Complete white stage 0.080
SRR8316903Complete white stage 0.108
SRR8316902Silver flowering stage0.048
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.032
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.019
SRR6706287Light intensity 50%0.014
SRR6706288Light intensity 20%0.024
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.233
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.486
CNS0095595Whole white alabastrum(diploid) 20.053
CNS0095596Whole white alabastrum(diploid) 30.110
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.060
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.083
CNS0095601Golden flower (diploid) 10.021
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.050
CNS0095605Slightly white alabastrum(tetraploid) 20.077
CNS0095606Slightly white alabastrum(tetraploid) 30.051
CNS0095607Whole white alabastrum(tetraploid) 10.050
CNS0095608Whole white alabastrum(tetraploid) 20.171
CNS0095609Whole white alabastrum(tetraploid) 30.199
CNS0095610Silvery flower (tetraploid) 10.067
CNS0095611Silvery flower (tetraploid) 20.059
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.006
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.156
CRA001975CRR073297Stem 10.086
CRR073298Stem 20.166
CRR073299Stem 30.126
CRR073300Leaf 10.083
CRR073301Leaf 20.042
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.225
CRR073304Juvenile bud 20.254
CRR073305Juvenile bud 30.004
CRR073306Third green 10.000
CRR073307Third green 20.223
CRR073308Third green 30.066
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.012
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.006
CRR073320Tawny withering 30.000