Gene detail

Detail information of GWHGAAZE019115

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009797340.1	6.05266E-52	PREDICTED: F-box protein At3g07870-like isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q9SFC7\|FB135_ARATH	0.000000008	F-box protein At3g07870
trEMBL	tr\|A0A059B7J8\|A0A059B7J8_EUCGR	1E-46	Uncharacterized protein {ECO:0000313\|EMBL:KCW62103.1}
TAIR10	AT3G07870.1	0.00000002	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	32116518	32117765	+
GWHAAZE00000005	mRNA	32116518	32117765	+
GWHAAZE00000005	exon	32116518	32117765	+
GWHAAZE00000005	CDS	32116518	32117765	+

Transcript Sequence
>GWHTAAZE019137 ATGTTACTACATTGCTTGACATGGATTCCACATCTTTGGGATCAGTTATTTGGTTTATTTGTACTTTTCAAAAATGGGGTTGTTAGACATCTTCCCGATGATATCATCGTCAATATTCTCAGTAGACTCCCAGCGGATTGCGTTTTGGAATCTAGAAGAGTCTGTAAGAAGTGGCAAGTACTGACCTCGTCGCCTAAATTTGCAGAATTGCATCTCAGAAATGTTACTTCATCAACTTTTGTGAGCATCACTGAATACGGGGATGACATTAACATGTTCGTTTTTGATGAACAAGCTAAAACAGATAAAAGGGTCATCAAAATTTGGACAAGCCCGGACCATCTTGTACTAAATCCATACAAGCTCATGCTTATTGGTTCTTGCAATGGGTTACTTCTGTTTGAAGAATTCAACATATTCTCAAGGATATATATTTTAAATCCTGTCACGCAAGAGCAGAGATTTATTACATTTACTAGAAATTGCCCTGGTTATTTATGCGGAGTCTACTTTCATCGATTAACTGAAAAATACAAGTTACTTACCGTGTACGATGATAGAAATTGCTATTGCTATATGACAAACAACCTCGGGGACAAGAGTTGGATTCCGCTCACCAGTTTCAGCCGTAGGCCTAGATCTAGAAAATGTCACATGCTCCAATTTAGTTATAATGTGCCTGTGAATGTGCATGGGTCACTACATTGGTTGGCCAAAAGTAAAACTACAGACAAAGTCGATACTGATAACTGTAAAAGCGCGATCTTGATTTTCAGGACAGATATCGAAAATTTTGACTGCATGCCTCATCCTGGAACCGCGTGCCACTTGGGGAGTACGGTGGTGGAGCACAAAAGGATGCGACTCCTAGTAATGAAAGAGAAATTATGTTTGTGCCATTACCATGTCAAAGAAATGAAAATGAGCATATGGGTGTTGGAGGATTATGGAAAGTGGGATTGGGTTAGAAGGTACAAGGTCAATCTTGATTGGGGTTTCAAATGTGGTCTTTTTGAGTATCGTGATAAATTTATATCAGAGAGACTGAAGAAGGTGAAGGCAGTTTGCATTCAAAATGGTGAGTTGTTGTTGTATTGGCATGAAAAGGAATGCTTTTTTTGGTACCATTTGGAGAAGAATAGTGTGAGAAAACTTAAAAGTAAGTGGATTAAGATATCGAGATATGTGAATTGCAATTGCCAAACAATTCCTTACACCAAATCGCTTGTGAGCTTGAGAAACATTTAG

Network for GWHGAAZE019115

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	31	67	1.80E-07
PF07734.14	FBA_1	228	385	5.80E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.109
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.073
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.670
	SRR3591711	White flower	0.119
	SRR3591712	Green floral bud	2.166
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.225
	SRR8316896	Juvenile bud stage	4.497
	SRR8316897	Juvenile bud stage	4.174
	SRR8316894	Third green stage	0.886
	SRR8316900	Third green stage	1.367
	SRR8316901	Third green stage	1.553
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.021
	SRR6706287	Light intensity 50%	0.038
	SRR6706288	Light intensity 20%	0.082
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.095
	CNS0095593	Slightly white alabastrum(diploid) 2	2.724
	CNS0095594	Slightly white alabastrum(diploid) 3	5.162
	CNS0095595	Whole white alabastrum(diploid) 2	2.083
	CNS0095596	Whole white alabastrum(diploid) 3	5.218
	CNS0095597	Whole white alabastrum(diploid) 4	2.653
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.040
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.827
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.877
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.082
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.566
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.705
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.769
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.076
	CNS0095612	Silvery flower (tetraploid) 3	0.077
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.236
CRA001975	CRR073297	Stem 1	0.849
	CRR073298	Stem 2	0.653
	CRR073299	Stem 3	0.504
	CRR073300	Leaf 1	0.290
	CRR073301	Leaf 2	0.247
	CRR073302	Leaf 3	0.085
	CRR073303	Juvenile bud 1	0.117
	CRR073304	Juvenile bud 2	0.002
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.007
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.006
	CRR073316	Gold flowering 2	0.004
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.052
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000