Gene detail

Detail information of GWHGAAZE019079

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006470964.1	0	PREDICTED: probable glutamate--tRNA ligase, cytoplasmic-like isoform X1 [Citrus sinensis]
Swissprot	tr\|P52780\|SYQ_LUPLU	5E-30	Glutamine--tRNA ligase
trEMBL	tr\|A0A067DV09\|A0A067DV09_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO42441.1} (Fragment)
TAIR10	AT5G26710.1	5E-151	Glutamyl/glutaminyl-tRNA synthetase, class Ic

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	31389917	31393288	+
GWHAAZE00000005	mRNA	31389917	31393288	+
GWHAAZE00000005	exon	31389917	31390295	+
GWHAAZE00000005	exon	31390401	31390659	+
GWHAAZE00000005	exon	31390738	31390801	+
GWHAAZE00000005	exon	31391550	31391620	+
GWHAAZE00000005	exon	31391740	31391781	+
GWHAAZE00000005	exon	31391879	31392206	+
GWHAAZE00000005	exon	31393070	31393288	+
GWHAAZE00000005	CDS	31389917	31390295	+
GWHAAZE00000005	CDS	31390401	31390659	+
GWHAAZE00000005	CDS	31390738	31390801	+
GWHAAZE00000005	CDS	31391550	31391620	+
GWHAAZE00000005	CDS	31391740	31391781	+
GWHAAZE00000005	CDS	31391879	31392206	+
GWHAAZE00000005	CDS	31393070	31393288	+

Transcript Sequence
>GWHTAAZE019101 ATGCGAGAGGATGTTACTGAAAGGGGTAAAGCGGGCAGCCAACCGAATTTTGAAGTGAATCTTCCTGAAGCTGAGTTTGGAAAAGTGCGTCTACGATTTGCACCAGAGCCAAGTGGATATCTTCATATTGGCCATTCAAAAGCAGCACTCTTGAACCATTATTTTGCAAAAAAGTACGAAGGTGAGCTGATTGTGCGTTTTGATGACACAAATCCCGCTAAAGAAAGCAATGAATTTGTGGATAATCTTCTGAAAGATATTGAAACTTTGGGTATAAAGTATGCGGATGTTACGTATACATCTAATTACTTCCCAAATCTAATGGAATTAGCGGAGAAATTGATTTGGGAGGGTAAGGCATATGTTGACGATACACCACAAAGGGGTTTGATGTGCTGTGTCCGTGGGAAATTGGATATGCAGGACCCAAACAAGTCACTTAGGGATCCAGTGTATTACCGTTGCAATCCAGTGCCTCACCACAGGATTGGGTCCAAGTATAAAGTGTACCCTACTTATGATTTTGCTTGCCCATTTGTTGATGCGAGGAAGGTATTACACATGCACTCCGGTCTAGTGAGTATCATGATCGCAATGCTCAGTATTACAGGATTCAAGAGGATATTGGAGTCCGAAAGAACGGACACGTTGAAGGGTGGGATGATGCTCGTTTCCCAACCATCCAAGGAATTGTGCGTAGGGGCACGGTGGATGTCAGATTGGGCAAGAGTATCTTCTCCGGGTGGGTTTGTTTTATACTTGCAGTTGCAGTTGGGCTCAAAAAATCTCAATCTAATGGAGTGGGACAAACTCTGGAACCATTTGTACGCATCATACCCAAGACATAAGAAATCTGAAGGTGCAGGGGATAAGGCTACCACTTACACAAAGAGCATATGGATAGACCATGCTGATGCTGAAGCCATCTCTGCCAACGAGGAAATAACATTAATGGATTGGGGAAATGCCATTGTTAAAGAAATCAAGAAAGACCAAGATGGTAATGTCACACAGTTGACTGGGGTCTTGCATCTTCAAGGATCATTCAAAACCACAAAGTTGAAACTTACCTGGCTACCCTACACGGCCGAGCTTGTTACACTCATGTTGGTGGAGTTTGGTTATTTAATCACAAAGAAGAAGCTTGATGAAGATGAGGATTTTGTTAAAGTGCTTAATCCGTGCACAAAAAAGGAGGTTGCTGCACTCGGGGACTCAAACATGAGGAATCTTAAGCGGAATGAGATATTACAACTCGAGAGAAAAGGCTACTTCAGATGTGATGTCCCTTTTTTGAGGCCCTCAAAGCCCATAGTCTTATATGCAATTCCAGATGGGAGGCAGCAATCTTTATTGAAGTAA

Network for GWHGAAZE019079

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00749.22	tRNA-synt_1c	28	127	4.10E-39
PF00749.22	tRNA-synt_1c	128	182	5.20E-12
PF03950.19	tRNA-synt_1c_C	273	428	6.80E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01885	EARS, gltX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Porphyrin and chlorophyll metabolism	map00860
		Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0043039	biological_process	tRNA aminoacylation
GO:0006412	biological_process	translation
GO:0005737	cellular_component	cytoplasm
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.790
	SRR3591706	second leaf	0.938
	SRR3591707	mature leaf	0.318
	SRR3591708	Shoot apex	1.195
	SRR3591709	Stem	0.569
	SRR3591710	White floral bud	0.565
	SRR3591711	White flower	0.774
	SRR3591712	Green floral bud	0.270
	SRR3591713	Yellow flower	1.383
SRP173429	SRR8316895	Juvenile bud stage	0.586
	SRR8316896	Juvenile bud stage	1.775
	SRR8316897	Juvenile bud stage	0.900
	SRR8316894	Third green stage	0.371
	SRR8316900	Third green stage	0.693
	SRR8316901	Third green stage	0.456
	SRR8316898	Complete white stage	0.099
	SRR8316899	Complete white stage	0.344
	SRR8316903	Complete white stage	0.496
	SRR8316902	Silver flowering stage	0.122
	SRR8316904	Silver flowering stage	0.362
	SRR8316905	Silver flowering stage	0.248
	SRR8316906	Gold flowering stage	1.179
	SRR8316907	Gold flowering stage	0.902
	SRR8316908	Gold flowering stage	1.584
SRP132670	SRR6706286	Control	0.408
	SRR6706287	Light intensity 50%	0.304
	SRR6706288	Light intensity 20%	0.334
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.677
	CNS0095593	Slightly white alabastrum(diploid) 2	0.249
	CNS0095594	Slightly white alabastrum(diploid) 3	0.510
	CNS0095595	Whole white alabastrum(diploid) 2	0.447
	CNS0095596	Whole white alabastrum(diploid) 3	0.167
	CNS0095597	Whole white alabastrum(diploid) 4	0.040
	CNS0095598	Silvery flower (diploied) 1	0.237
	CNS0095599	Silvery flower (diploied) 2	0.393
	CNS0095600	Silvery flower (diploied) 3	0.586
	CNS0095601	Golden flower (diploid) 1	0.009
	CNS0095602	Golden flower (diploid) 2	0.524
	CNS0095603	Golden flower (diploid) 3	0.415
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.361
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.233
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.469
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.046
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.031
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.186
	CNS0095610	Silvery flower (tetraploid) 1	0.015
	CNS0095611	Silvery flower (tetraploid) 2	0.060
	CNS0095612	Silvery flower (tetraploid) 3	0.910
	CNS0095613	Golden flower (tetraploid) 1	0.075
	CNS0095614	Golden flower (tetraploid) 2	0.226
	CNS0095615	Golden flower (tetraploid) 3	0.024
CRA001975	CRR073297	Stem 1	0.794
	CRR073298	Stem 2	0.864
	CRR073299	Stem 3	0.670
	CRR073300	Leaf 1	0.023
	CRR073301	Leaf 2	0.242
	CRR073302	Leaf 3	0.493
	CRR073303	Juvenile bud 1	0.053
	CRR073304	Juvenile bud 2	0.240
	CRR073305	Juvenile bud 3	0.185
	CRR073306	Third green 1	0.236
	CRR073307	Third green 2	0.256
	CRR073308	Third green 3	0.211
	CRR073309	Second white 1	0.329
	CRR073310	Second white 2	0.776
	CRR073311	Second white 3	0.380
	CRR073312	Silver flowering 1	0.137
	CRR073313	Silver flowering 2	0.014
	CRR073314	Silver flowering 3	0.731
	CRR073315	Gold flowering 1	0.031
	CRR073316	Gold flowering 2	0.115
	CRR073317	Gold flowering 3	0.021
	CRR073318	Tawny withering 1	0.290
	CRR073319	Tawny withering 2	1.382
	CRR073320	Tawny withering 3	0.618