Gene detail

Detail information of GWHGAAZE019031

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007037697.1	8.3878E-152	NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|P60839\|DRL2_ARATH	2E-53	Probable disease resistance protein At1g12290
trEMBL	tr\|A0A061G5B7\|A0A061G5B7_THECC	3E-152	NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313\|EMBL:EOY22199.1}
TAIR10	AT1G12290.1	3E-50	Disease resistance protein (CC-NBS-LRR class) family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	30446750	30450007	+
GWHAAZE00000005	mRNA	30446750	30450007	+
GWHAAZE00000005	exon	30446750	30450007	+
GWHAAZE00000005	CDS	30446750	30450007	+

Transcript Sequence
>GWHTAAZE019053 ATGGCTGAGATAATTGGAGCAGGTGCTGGTGTGCTGTCGGCAATGGTGGCCGTCTACCAACTATTGATGGACAAAATCGAAGCTTCAAAAGATTTGGAGGGGATCTGCAAAAATTTGGATGAGGCTATGCAAATGCTGTGTGCAGCACGGGATGATCGCGAGCACATATTTAAGGCACACCGTTCAAGAAAGGAGCGAACCAAAACATATAGTGCCTGGCTCGGCAGAGTAAGAAAGTTGGAAGGTGAAGTGAACGGAATGAAAGCGAAGTATGACAGGCAAAAAAGAAAGATAAACATGTTAAAACTTTCTCGTTCAAATTTGGGTGGAGAGATGAAAACCAAGAGTTTAGAGGCCCTCAGTCTTTACAAGGAGGTCTTAACAGATATGTTAGTGGAAAGGGATCCCGAACCTGTCCTAAAGATGAAAGCACCAAACATAAAAGAAGTACCTACACATCAAAAGTATTTGGAGTTGATACTACGTCATCTAAAAGACTCTAGAGTTAAAGGTATCAGAGTGCTGGGGCAGTTTGGTGTAGGGAAAACAGTGGTCATGCAGAACTTGAATAACCATGAAGATGTAGCTAAGATGTTTGAATTAGTCATCTGGGTTAAGGTTTCAAATAACAGCAAGAATTTTAGCATCAGGGAAATGCAGGAAGATATTGTTACAAGATTGAAGGTTGATATGGAAGGCAAGTACAATTACACGGAGAGAATAAGAGACGAGTTAGAGGGAAAGAAGTCTTTGTTGCTTCTTGACGGTGTTAATGAAGACCTTGATTTAGAAAAAATTGGAATTCATCCTAATGATGAGAGCGGCAGCAAGATAGTATTGACAACTAGGTTGAATCGTGTTTGTCACTCGATGGTGAACCGGGTGATCGAAATTGAAAGATTAAGTTACGACGAAGCACGAGACATGTTTCAAAAGGTTTTGGGTCACTCAAGAACTTGGCGAGTTATGCGAGAAGTTATTGAATATTGTTACGGTCTTCCATTTTTAATACAAACAGTAGCAAGCGCTTTCAAAAATAGAGATACTGAGGAGAGCTGGGACATAGGGTTGAGTAATTTAAAATATTTTCCTGATAAAGGAGATCCTTCCATTCAGATTGTATATAAATATTTAGAATTTTGTTGTAACGAGTTGAAGGGCGTTCAAAAGGATTGCTTTCTATATAGTGCAATGTTTTCAGAAGAGAGTGACATAAACACACATTGTTTATTGGATTGCTGGGCTGCTGAAGATTTGTGCGGCACTAACCAGGCACGTGCATATGGGCGTCAAATATTAGAAGAGCTTAAGACAATGTCATTACTCGAAGAAGGTCTGTGTGGTCGTGGGGAAAATGTTAGGATGCACAAATTGATCCGAAAAGTTGCATTGGATAAGTTGTTAGCTGATGATAGACGTAAACATCTGGTGAGAACAGGTGCACTATTGCAAGATCCCCCAAAGGTCGAAGACTGGAACCAGAAGGATCGAATCTCTTTGGTTGACAACAACTTAACAGTCATACCAGAATGCCCAGATTCTCCTTTCCTTTTCACACTCTTTCTACAGAAAAATCGAAGTTTGAACCATATTCATACAATTTTCTTTGAGAATATGGGAAATCTTCGAATTCTGAACCTGCAAAATACTGGAATTGCATCACTCCCATCTTCATTATGGAAGCTGAAACTTCTGAAAGTTCTCTATTTAAATGGTTGTACTAGGCTGTTGAAGCTTCCTTTTGAAATAAGAGAACTGGCAAGTCTCGAAGTGCTTGATATACGAGGCACCGGAGTCGAGATTATACACAAGCCTTTTCCCTATTCAAAAATTCAATTTGTTAGTGGGCTCATTCAGAAAGTAGTATTTGGAGAAGCCCATCCTCATCCATGGACGCCCATCCCCAACATTGGGAGTCTGCCTCATTTGAAGCGTTTGTTGGTGTCCTTCAATAGTTTTGGCAATGAAAATGTTTCTCGACATGTTTTACATTTTCATAACGAGATCTCCAATATCCCTCCTGCATTGGAAGAGCTGGTCATTGATGTGAATTCATACAAGAAATTTTGCGACAAGATGATAAATGTTGTGAGAAATAGTGTAGCTGCCATGAAAAATCTGACAACTCTCAAGTTTCTTTTTAAAGATTGTGTTGAAGAAGTCATAAAGGTGGTGGCTGGTACTAAAAGAACCTACTTTCCCGAAGCCGGTGATCTTGCGAGTTTCCTCGAGAAGACGAACAACTTCGACTCAAAATTGTCGTTTGAAGTTTACATTGGCTGCTCTATCTCATCACATCAAATTCCCGAGATTAACCAATATCAGAGGTACCTGAAAATTTGCAACGCGAAGAGCTGTGAACCCACCACCAGCGTTAGTGAGGTGCTTTCTAGATCCGATGCATTTGAATTGGTTAGCCACTGTGAGCTTGAGCATGTATCCCAGCTTGGAACCACAAGCTTCGACGGGGTCAAAGGTTGTCTAGTTGAAGGCTGCAACAAAATTGTAGCAATAGCTGATGGTAACTGCCCCATGGACGGCCCAATGCTACCAAACTTATTAGAATTATACATGAAGAAATTGCCGCGGTTGAAAAGCATATGGAGGGGTGGGCCCTTGAAGGTGGGCAGCCTGTTTAGTCTGAGGACCCTGCTAATTGAGGATTGCTTCGCAATTCAAGAGCTATTCACTGATTCTGGGATCAGAGTCCTCCCAAATCTGAGGAAGCTAATGCTTGTTAATTTGCAAAATTTAACAAGCATTTGCACGAATTTCCCTTCTGATCAGTGGCCAGCCTTAGAAGAACTGAAGATACATGGGTGTCCCCTTTTAACCGGTTTACCCTTTGAAGACAAGAACGCGATGAAGCTGAGGAAGCTAATACTTCTCGATATGAACAATTTAACGATTTGCGCAAATGAGTCTGTGCAGTGGCCGGCCTTAGAGAAGCTGAAGATACATGGCTGTGTCAGTTTGTCTTCATTGCCTTTGAGCAAAGATAGCACAATTAATCTGAGGAAGTTAACACTTCTTGATCTGCCAAACTTAACAACTCTTTGCACAGCTGAGTCACTTGAGTGGTCTGCCTTAGAGAAGCTCAAGATACAAGGGTGTCCAAGTTTGACTGAGTTACCTTTTAAGCAAGGTAAGGCATTGAAGCTAAGGTCAGTTCAAGCATCACAAAAGTGGTGGGAGGCACTGAAAGGGCTAGACTCCGAGGTCAAACAACGTCTTCATCAGGTTTATCGCTCCCTTTAG

Network for GWHGAAZE019031

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	158	382	5.60E-33
PF13855.7	LRR_8	519	573	7.70E-07

Protein Sequence

>GWHPAAZE019042
MAEIIGAGAGVLSAMVAVYQLLMDKIEASKDLEGICKNLDEAMQMLCAARDDREHIFKAHRSRKERTKTYSAWLGRVRKLEGEVNGMKAKYDRQKRKINMLKLSRSNLGGEMKTKSLEALSLYKEVLTDMLVERDPEPVLKMKAPNIKEVPTHQKYLELILRHLKDSRVKGIRVLGQFGVGKTVVMQNLNNHEDVAKMFELVIWVKVSNNSKNFSIREMQEDIVTRLKVDMEGKYNYTERIRDELEGKKSLLLLDGVNEDLDLEKIGIHPNDESGSKIVLTTRLNRVCHSMVNRVIEIERLSYDEARDMFQKVLGHSRTWRVMREVIEYCYGLPFLIQTVASAFKNRDTEESWDIGLSNLKYFPDKGDPSIQIVYKYLEFCCNELKGVQKDCFLYSAMFSEESDINTHCLLDCWAAEDLCGTNQARAYGRQILEELKTMSLLEEGLCGRGENVRMHKLIRKVALDKLLADDRRKHLVRTGALLQDPPKVEDWNQKDRISLVDNNLTVIPECPDSPFLFTLFLQKNRSLNHIHTIFFENMGNLRILNLQNTGIASLPSSLWKLKLLKVLYLNGCTRLLKLPFEIRELASLEVLDIRGTGVEIIHKPFPYSKIQFVSGLIQKVVFGEAHPHPWTPIPNIGSLPHLKRLLVSFNSFGNENVSRHVLHFHNEISNIPPALEELVIDVNSYKKFCDKMINVVRNSVAAMKNLTTLKFLFKDCVEEVIKVVAGTKRTYFPEAGDLASFLEKTNNFDSKLSFEVYIGCSISSHQIPEINQYQRYLKICNAKSCEPTTSVSEVLSRSDAFELVSHCELEHVSQLGTTSFDGVKGCLVEGCNKIVAIADGNCPMDGPMLPNLLELYMKKLPRLKSIWRGGPLKVGSLFSLRTLLIEDCFAIQELFTDSGIRVLPNLRKLMLVNLQNLTSICTNFPSDQWPALEELKIHGCPLLTGLPFEDKNAMKLRKLILLDMNNLTICANESVQWPALEKLKIHGCVSLSSLPLSKDSTINLRKLTLLDLPNLTTLCTAESLEWSALEKLKIQGCPSLTELPFKQGKALKLRSVQASQKWWEALKGLDSEVKQRLHQVYRSL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13459	RPS2	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.014
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	2.718
	SRR3591711	White flower	5.556
	SRR3591712	Green floral bud	3.154
	SRR3591713	Yellow flower	3.625
SRP173429	SRR8316895	Juvenile bud stage	3.530
	SRR8316896	Juvenile bud stage	3.871
	SRR8316897	Juvenile bud stage	0.043
	SRR8316894	Third green stage	1.078
	SRR8316900	Third green stage	2.417
	SRR8316901	Third green stage	2.653
	SRR8316898	Complete white stage	0.529
	SRR8316899	Complete white stage	5.587
	SRR8316903	Complete white stage	1.599
	SRR8316902	Silver flowering stage	3.085
	SRR8316904	Silver flowering stage	4.263
	SRR8316905	Silver flowering stage	2.035
	SRR8316906	Gold flowering stage	6.812
	SRR8316907	Gold flowering stage	3.525
	SRR8316908	Gold flowering stage	1.847
SRP132670	SRR6706286	Control	3.929
	SRR6706287	Light intensity 50%	3.272
	SRR6706288	Light intensity 20%	3.043
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.454
	CNS0095593	Slightly white alabastrum(diploid) 2	1.970
	CNS0095594	Slightly white alabastrum(diploid) 3	1.015
	CNS0095595	Whole white alabastrum(diploid) 2	1.008
	CNS0095596	Whole white alabastrum(diploid) 3	0.631
	CNS0095597	Whole white alabastrum(diploid) 4	1.118
	CNS0095598	Silvery flower (diploied) 1	4.814
	CNS0095599	Silvery flower (diploied) 2	4.750
	CNS0095600	Silvery flower (diploied) 3	4.145
	CNS0095601	Golden flower (diploid) 1	4.931
	CNS0095602	Golden flower (diploid) 2	6.815
	CNS0095603	Golden flower (diploid) 3	6.551
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.205
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.668
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.953
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.025
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.617
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.959
	CNS0095610	Silvery flower (tetraploid) 1	3.676
	CNS0095611	Silvery flower (tetraploid) 2	4.310
	CNS0095612	Silvery flower (tetraploid) 3	1.951
	CNS0095613	Golden flower (tetraploid) 1	2.999
	CNS0095614	Golden flower (tetraploid) 2	3.825
	CNS0095615	Golden flower (tetraploid) 3	4.331
CRA001975	CRR073297	Stem 1	3.207
	CRR073298	Stem 2	4.083
	CRR073299	Stem 3	2.103
	CRR073300	Leaf 1	3.317
	CRR073301	Leaf 2	3.149
	CRR073302	Leaf 3	1.776
	CRR073303	Juvenile bud 1	0.715
	CRR073304	Juvenile bud 2	0.990
	CRR073305	Juvenile bud 3	2.603
	CRR073306	Third green 1	0.318
	CRR073307	Third green 2	0.431
	CRR073308	Third green 3	0.549
	CRR073309	Second white 1	0.761
	CRR073310	Second white 2	1.020
	CRR073311	Second white 3	1.021
	CRR073312	Silver flowering 1	0.592
	CRR073313	Silver flowering 2	1.180
	CRR073314	Silver flowering 3	0.480
	CRR073315	Gold flowering 1	4.544
	CRR073316	Gold flowering 2	9.224
	CRR073317	Gold flowering 3	3.501
	CRR073318	Tawny withering 1	3.785
	CRR073319	Tawny withering 2	5.097
	CRR073320	Tawny withering 3	2.367