Gene detail

Detail information of GWHGAAZE019014

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO41350.1	5.40863E-74	hypothetical protein CISIN_1g022657mg [Citrus sinensis]
Swissprot	tr\|P69834\|ISPD_ARATH	8E-69	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic (Precursor)
trEMBL	tr\|A0A067DIH2\|A0A067DIH2_CITSI	2E-74	Uncharacterized protein {ECO:0000313\|EMBL:KDO41350.1}
TAIR10	AT2G02500.1	2E-56	Nucleotide-diphospho-sugar transferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	29239954	29242158	-
GWHAAZE00000005	mRNA	29239954	29242158	-
GWHAAZE00000005	exon	29239954	29240022	-
GWHAAZE00000005	exon	29240342	29240451	-
GWHAAZE00000005	exon	29240602	29240728	-
GWHAAZE00000005	exon	29240836	29240904	-
GWHAAZE00000005	exon	29241516	29241584	-
GWHAAZE00000005	exon	29242060	29242158	-
GWHAAZE00000005	CDS	29242060	29242158	-
GWHAAZE00000005	CDS	29241516	29241584	-
GWHAAZE00000005	CDS	29240836	29240904	-
GWHAAZE00000005	CDS	29240602	29240728	-
GWHAAZE00000005	CDS	29240342	29240451	-
GWHAAZE00000005	CDS	29239954	29240022	-

Transcript Sequence
>GWHTAAZE019036 ATGTTATTTTTTCCCGTACAGGCTGTTGATCTAAACTCTGAACTTGTATGCGTCCATGATTCTGCAAGACCCCTGGTATCGTCTGAAGATGTGAAAAAGGTTATGGAGGATGCTTTATCGGTTGGAGCAGCTGTACTTGGTGTCCCTGCTAAAGCTACAATCAAAGAGGCAAATAGCGAATCTTTTGTAGTGAAAACTCTGGACCGAAAAACACTCTGGGAGATGCAGACTCCACAGGTTATCAAGCCTGAGTTACTTACGAAGGGCTTTGAGCTTGTCAATAGGTACTTAGTTATTCATTTTAATTTAACCATCTATTTTTTATTTATTTATAACAGTACTCAACTTCTCCAATTTACTGGAACATTTGTATATTTCTACAGAGGTGGTCTTGAAGTCACTGATGATGTGTCCATTGTGGAGCACCTTAGGCATCCTGTTTACATTACCGAAGGAACTTACACAAACATCAAGGTTACAACCCCTGATGATCTACTACTTGCAGAAAGGATATTGAACACTGCCTCTGCAGTGGCAGCTTAG

Network for GWHGAAZE019014

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01128.20	IspD	6	91	3.10E-19
PF01128.20	IspD	129	173	1.20E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00991	ispD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0008299	biological_process	isoprenoid biosynthetic process
GO:0070567	molecular_function	cytidylyltransferase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.144
	SRR3591706	second leaf	0.399
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.022
	SRR3591709	Stem	0.124
	SRR3591710	White floral bud	0.008
	SRR3591711	White flower	0.138
	SRR3591712	Green floral bud	0.011
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.400
	SRR8316896	Juvenile bud stage	0.845
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.088
	SRR8316900	Third green stage	0.041
	SRR8316901	Third green stage	0.293
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.062
	SRR8316908	Gold flowering stage	0.192
SRP132670	SRR6706286	Control	0.024
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.161
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.752
	CNS0095595	Whole white alabastrum(diploid) 2	0.089
	CNS0095596	Whole white alabastrum(diploid) 3	0.033
	CNS0095597	Whole white alabastrum(diploid) 4	0.251
	CNS0095598	Silvery flower (diploied) 1	0.005
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.003
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.983
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.091
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.165
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.312
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.331
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.408
	CNS0095610	Silvery flower (tetraploid) 1	0.219
	CNS0095611	Silvery flower (tetraploid) 2	0.203
	CNS0095612	Silvery flower (tetraploid) 3	0.279
	CNS0095613	Golden flower (tetraploid) 1	0.006
	CNS0095614	Golden flower (tetraploid) 2	0.016
	CNS0095615	Golden flower (tetraploid) 3	0.092
CRA001975	CRR073297	Stem 1	0.043
	CRR073298	Stem 2	0.091
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.103
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.143
	CRR073303	Juvenile bud 1	0.070
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.010
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.007
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.050
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.199
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000