Detail information of GWHGAAZE018975


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011087634.10PREDICTED: protein FAR1-RELATED SEQUENCE 11 [Sesamum indicum]
Swissprottr|Q9SY66|FRS11_ARATH0Protein FAR1-RELATED SEQUENCE 11
trEMBLtr|A0A067LDA9|A0A067LDA9_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP42485.1}
TAIR10AT1G10240.10FAR1-related sequence 11

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2809377728096936-
GWHAAZE00000005mRNA2809377728096936-
GWHAAZE00000005exon2809377728094403-
GWHAAZE00000005exon2809501828095461-
GWHAAZE00000005exon2809595928096936-
GWHAAZE00000005CDS2809595928096936-
GWHAAZE00000005CDS2809501828095461-
GWHAAZE00000005CDS2809377728094403-
Transcript Sequence

Network for GWHGAAZE018975

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03101.16FAR1621551.50E-18
PF10551.10MULE2783702.80E-18
PF04434.18SWIM5595878.20E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyFAR1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.430
SRR3591706second leaf9.986
SRR3591707mature leaf6.662
SRR3591708Shoot apex13.120
SRR3591709Stem9.102
SRR3591710White floral bud10.245
SRR3591711White flower12.770
SRR3591712Green floral bud11.804
SRR3591713Yellow flower10.682
SRP173429 SRR8316895Juvenile bud stage 10.263
SRR8316896Juvenile bud stage 14.061
SRR8316897Juvenile bud stage 3.041
SRR8316894Third green stage 4.291
SRR8316900Third green stage 13.285
SRR8316901Third green stage 13.599
SRR8316898Complete white stage 4.319
SRR8316899Complete white stage 18.153
SRR8316903Complete white stage 8.905
SRR8316902Silver flowering stage4.328
SRR8316904Silver flowering stage7.141
SRR8316905Silver flowering stage2.925
SRR8316906Gold flowering stage 10.104
SRR8316907Gold flowering stage 9.708
SRR8316908Gold flowering stage 7.781
SRP132670SRR6706286Control13.923
SRR6706287Light intensity 50%12.454
SRR6706288Light intensity 20%12.487
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.630
CNS0095593Slightly white alabastrum(diploid) 29.328
CNS0095594Slightly white alabastrum(diploid) 38.891
CNS0095595Whole white alabastrum(diploid) 26.336
CNS0095596Whole white alabastrum(diploid) 38.745
CNS0095597Whole white alabastrum(diploid) 47.735
CNS0095598Silvery flower (diploied) 19.033
CNS0095599Silvery flower (diploied) 28.249
CNS0095600Silvery flower (diploied) 314.933
CNS0095601Golden flower (diploid) 19.371
CNS0095602Golden flower (diploid) 214.521
CNS0095603Golden flower (diploid) 314.188
CNS0095604Slightly white alabastrum(tetraploid) 113.630
CNS0095605Slightly white alabastrum(tetraploid) 211.748
CNS0095606Slightly white alabastrum(tetraploid) 320.394
CNS0095607Whole white alabastrum(tetraploid) 18.065
CNS0095608Whole white alabastrum(tetraploid) 28.810
CNS0095609Whole white alabastrum(tetraploid) 315.406
CNS0095610Silvery flower (tetraploid) 114.052
CNS0095611Silvery flower (tetraploid) 214.230
CNS0095612Silvery flower (tetraploid) 312.929
CNS0095613Golden flower (tetraploid) 19.155
CNS0095614Golden flower (tetraploid) 212.175
CNS0095615Golden flower (tetraploid) 313.979
CRA001975CRR073297Stem 113.598
CRR073298Stem 213.104
CRR073299Stem 311.254
CRR073300Leaf 112.885
CRR073301Leaf 212.431
CRR073302Leaf 310.117
CRR073303Juvenile bud 112.678
CRR073304Juvenile bud 29.546
CRR073305Juvenile bud 313.068
CRR073306Third green 15.087
CRR073307Third green 25.396
CRR073308Third green 34.744
CRR073309Second white 16.106
CRR073310Second white 26.905
CRR073311Second white 36.273
CRR073312Silver flowering 17.634
CRR073313Silver flowering 28.699
CRR073314Silver flowering 38.434
CRR073315Gold flowering 16.074
CRR073316Gold flowering 28.603
CRR073317Gold flowering 38.547
CRR073318Tawny withering 16.859
CRR073319Tawny withering 29.093
CRR073320Tawny withering 310.155