Gene detail

Detail information of GWHGAAZE018901

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009603651.1	PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Nicotiana tomentosiformis]
Swissprot	tr\|O49545\|BAME1_ARATH	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 (Precursor)
trEMBL	tr\|M1CBM6\|M1CBM6_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400064038}
TAIR10	AT5G65700.2	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	26609602	26613476	-
GWHAAZE00000005	mRNA	26609602	26613476	-
GWHAAZE00000005	exon	26609602	26610020	-
GWHAAZE00000005	exon	26611478	26613476	-
GWHAAZE00000005	CDS	26611478	26613476	-
GWHAAZE00000005	CDS	26609602	26610020	-

Transcript Sequence
>GWHTAAZE018923 ATGAGTCTCTATGGCTCTGTTTCCCCTGTTTTGTCGAGCCTCGATAGGCTTATTGAGCTTTCTCTTGATGGAAACAACTTCACCGGCGAACTCAAAATTGCCAACTTAAGCAATCTTCAATTCCTAAACATATCGAACAACCAATTTAGCGGCGATTTGGATTGGGATTTTTCCAGTCTAGCAAATTTGGAGGTGTTTGATGCTTATAATAACAACTTCACTTCTTTCTTGCCACTTAACATTGTAAGCCTCAAGAAACTCAAGCACTTGGAGTTGGGAGGAAACTATTTCTACGGAAAAATCCCGGAAAGTTATGGGGATTTTAGCGTGCTGGAATACCTTTCCCTCACGGGAAATGATCTCCACGGAAAAATCCCGGATGAGTTGGGAAATCTCACCAACTTGAGACAGATCTACTTGGGCTCTTACAATGTCTTTGAAGGTGGAATACCAAGGGCATTTGGCAAATTGGTTAATCTTGTCCACATGGATCTTTCCTCTTGTGAGTTGGATGGGCCAATTCCTCATGAGCTCGGGAATTTGAAGTCACTCAACACTCTATTTCTTTACATCAATTTGCTTTCCGGCCCAATTCCAAAGGAATTGGGAAACCTCACAAGCTTGGTGAATCTTGATCTATCTGCCAATGCACTTTCTGGGGAAGTCCCAAACGAGCTCAATAACCTCAAACAACTCGAGCTTTTCAAACTCTTCATGAACAAGTTGCACGGGTCGATACCGGATTATTTAGTGGACTTTCCAAACTTGGAAACCCTTGATATTTGGACGAACAACTTCACTGGCGTGATTCCCTCCAATCTTGGTCAGAATGGGAAGCTTCGGGAGCTTGACTTGTCCTCCAACAAGCTCACTGGCACAATTCCTCAAAATTTGTGTGCTTCAAAACAGCTAAGAATCTTGATTTTGCGCAAAAATTTCTTGTTTGGGTCAATCCCAGAGGACTTGGGGACGTGTTCAAGCCTCGTTCGAGTAAGACTGGGAGAGAACTATTTGAATGGTAGCATTCCAAGTGGCTTCATTTACTTGCCACTGTTGAATTTGCTCGAGTTGCAAGACAATTACCTATCGGGGACTTTAGCCGAAAATGGTAACATTTCGTCCAAGCCAGCTAAATTAGGCCAGTTGAATTTAGCAAACAATCAACTTTCGGGTTCTTTACCATCTTCCCTTTCGAACTTTACCTCCCTCCAAATCCTTTTACTTTCTGGAAACATGTTTTCCGGCCCAATTCCTCCCTCCATTGGGGATCTCCACCAGGTACAGAAACTTGACCTGAGCAGTAATTCCATTTCCGGTGGAATCCCAATGGAAATTGGAAAATGTGATCATCTCACTTATGTGGATTTGAGCCGGAACAACCTGTCTGGCTCAATTCCACCTCAAGTATCCGACATCCGGATCTTGAACTACCTAAACCTATCAAGAAACCACTTAAACCAAACAATCCCCAAATCACTCGGCTCAATGAAAAGCCTCACAACAGCAGATTTTTCCTTCAACAAATTCTCAGGACAAGTGCCCGAAACCGGCCAATTCTCATTCTTCAATGTGTCCTCATTCGCGGGTAATCCCCAACTTTGTGGGCCCTTACTCAACAACCCATGTAACATCACTCAAATCCCCAAAACACCCACAAAATCCCATGGCGCGTTTAAGTTAGTATTTGCCCTCGGCCTCTTATTTTGCTCTCTAATATTCGCCACCGCAGCCATAATCAAATCCAAGTCATTCAAGCTAAAACCCGGGTCAAATTCTTGGAAAATGACGGCCTTCCAGAAGGTTGACTTCACAGTCTCCAACGTACTCGAGTGCACCAAGGACGGGAATGTATTAGGCAGAGGAGGTGCAGGCACGGTCTACCATGGAAAAATGCCCAATGGGGCCGAAATCGCGGTCAAGAAACTAGTTTCCGTAGGAAAATCGAGCCACGATCACGGCTTTAAAGCCGAGATACGCACTTTGGGCAACATTAGGCACCAATATGCTTACACTTTAAGAGTAGACGAGAAGAGCGATGTGTACAGTTTCGGAGTTGTCCTTCTTGAACTTATTACTGGTCGTCGCCCGGTAGGTGATTTTGAAGAAGGTGTGGACATCGTACAGTGGACGAAGGGAGTTACCAATTGCCGCAAAGAAGAGGTTGATGCCATTGCCGATCCAAGACTCACGTCAATCCCACGAGATGAAGCCATGCACCTACTCTTCATTGCCATGTTATGCACACAGGAAAATAGTGTCGAGAGACCAACAATGAGAGAAGTGGTTCAAATGTTATCTGAATTTCCTCGTCATTCTCCTGACTATCAATCCTCATCGTCTACATTTATCCATAACCAATCAACTGTTTCTGAAAAAGAGAAAAGTTGTCCCAAGATTCGGCAAGATCTCTTGGTTTAA

Network for GWHGAAZE018901

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	38	60	0.47
PF13855.7	LRR_8	254	312	1.10E-07
PF07714.18	PK_Tyr_Ser-Thr	674	765	1.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.544
	SRR3591706	second leaf	5.610
	SRR3591707	mature leaf	1.611
	SRR3591708	Shoot apex	16.903
	SRR3591709	Stem	9.276
	SRR3591710	White floral bud	8.466
	SRR3591711	White flower	3.242
	SRR3591712	Green floral bud	12.354
	SRR3591713	Yellow flower	0.768
SRP173429	SRR8316895	Juvenile bud stage	3.975
	SRR8316896	Juvenile bud stage	3.329
	SRR8316897	Juvenile bud stage	1.086
	SRR8316894	Third green stage	2.506
	SRR8316900	Third green stage	4.058
	SRR8316901	Third green stage	4.231
	SRR8316898	Complete white stage	0.388
	SRR8316899	Complete white stage	4.686
	SRR8316903	Complete white stage	0.745
	SRR8316902	Silver flowering stage	0.484
	SRR8316904	Silver flowering stage	0.368
	SRR8316905	Silver flowering stage	0.170
	SRR8316906	Gold flowering stage	0.238
	SRR8316907	Gold flowering stage	0.434
	SRR8316908	Gold flowering stage	0.516
SRP132670	SRR6706286	Control	2.309
	SRR6706287	Light intensity 50%	2.422
	SRR6706288	Light intensity 20%	1.780
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.128
	CNS0095593	Slightly white alabastrum(diploid) 2	6.239
	CNS0095594	Slightly white alabastrum(diploid) 3	3.261
	CNS0095595	Whole white alabastrum(diploid) 2	2.176
	CNS0095596	Whole white alabastrum(diploid) 3	2.214
	CNS0095597	Whole white alabastrum(diploid) 4	1.321
	CNS0095598	Silvery flower (diploied) 1	1.838
	CNS0095599	Silvery flower (diploied) 2	1.026
	CNS0095600	Silvery flower (diploied) 3	0.874
	CNS0095601	Golden flower (diploid) 1	1.334
	CNS0095602	Golden flower (diploid) 2	1.221
	CNS0095603	Golden flower (diploid) 3	1.074
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.404
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.489
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.453
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.200
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.015
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.959
	CNS0095610	Silvery flower (tetraploid) 1	0.554
	CNS0095611	Silvery flower (tetraploid) 2	0.966
	CNS0095612	Silvery flower (tetraploid) 3	1.126
	CNS0095613	Golden flower (tetraploid) 1	0.174
	CNS0095614	Golden flower (tetraploid) 2	0.387
	CNS0095615	Golden flower (tetraploid) 3	0.239
CRA001975	CRR073297	Stem 1	6.091
	CRR073298	Stem 2	8.148
	CRR073299	Stem 3	8.311
	CRR073300	Leaf 1	6.863
	CRR073301	Leaf 2	7.558
	CRR073302	Leaf 3	5.485
	CRR073303	Juvenile bud 1	3.180
	CRR073304	Juvenile bud 2	0.790
	CRR073305	Juvenile bud 3	4.294
	CRR073306	Third green 1	0.548
	CRR073307	Third green 2	0.672
	CRR073308	Third green 3	0.898
	CRR073309	Second white 1	0.389
	CRR073310	Second white 2	0.212
	CRR073311	Second white 3	0.174
	CRR073312	Silver flowering 1	0.098
	CRR073313	Silver flowering 2	0.407
	CRR073314	Silver flowering 3	0.021
	CRR073315	Gold flowering 1	0.789
	CRR073316	Gold flowering 2	1.459
	CRR073317	Gold flowering 3	1.264
	CRR073318	Tawny withering 1	9.333
	CRR073319	Tawny withering 2	8.490
	CRR073320	Tawny withering 3	9.389