Gene detail

Detail information of GWHGAAZE018855

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_003633408.1	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9C952\|CPSF3_ARATH	Cleavage and polyadenylation specificity factor subunit 3-I
trEMBL	tr\|F6HK83\|F6HK83_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55086.1}
TAIR10	AT1G61010.3	cleavage and polyadenylation specificity factor 73-I

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	25516834	25521027	+
GWHAAZE00000005	mRNA	25516834	25521027	+
GWHAAZE00000005	exon	25516834	25516986	+
GWHAAZE00000005	exon	25517082	25517179	+
GWHAAZE00000005	exon	25517723	25517768	+
GWHAAZE00000005	exon	25517848	25517997	+
GWHAAZE00000005	exon	25519384	25521027	+
GWHAAZE00000005	CDS	25516834	25516986	+
GWHAAZE00000005	CDS	25517082	25517179	+
GWHAAZE00000005	CDS	25517723	25517768	+
GWHAAZE00000005	CDS	25517848	25517997	+
GWHAAZE00000005	CDS	25519384	25521027	+

Transcript Sequence
>GWHTAAZE018877 ATGGCTTCAACGGGACAACCCCAATCGTCTCTTAAAAGACGTGATTCCATGCCACCAAGAGAAGGGGATCAGCTGATTATAACACCTCTAGGAGCTGGCAATGAAGTTGGCCGATCCTGCGTGTATATGACTTACAAAGGGAAAACCATCTTGTTTGATTGTGGAATTCATCCCGCGTACTCGGGCATGGCTGCTTTGCCATACTTTGATGAAATTGATCCTTCGACCATCGACGTTCTACTCATTACTCATTTCCATTTGGATCATGCGGCATCCCTTCCATACTTTCTGGAAAAGACCACATTCAAAGGGAGAGTTTTCATGACCCATGCAACAAAGGCTATCTACAAGTTGCTTTTGTCGGATTATGTGAAAGTGAGCAAAGTTTCAGTTGAAGATATGTTGTTCGATGAACAAGACATTCTTCGGTCCATGGACAAAATTGAGGTGATCGATTTCCATCAGACTCTAGAAGTGAACGGAATCCGCTTCTGGTGTTACACTGCTGGCCATGTCCTCGGTGCGGCCATGTTCATGGTTGACATAGCTGGTGTTCGAGTCCTCTACACTGGAGACTATTCACGCGAAGAAGACCGGCATCTTCGTGCCGCTGAGCTCCCACAATTCTCCCCTGATATATGCATCATTGAATCCACTTACGGTGTTCAACTCCATCAATCTAGAACCATTAGAGAAAAACGCTTCACTGATGTAATTCACAATACCGTTTCTCAAGGTGGTCGCGTTCTAATTCCCGCTTTTGCCCTTGGCCGTGCACAAGAACTCCTCTTGATCCTCGACGAGTATTGGTCAAACCACCCCGAGCTCCACAACATCCCTATATATTACGCTTCTCCCCTTGCAAAACGTTGCATGGCCGTTTACCAAACCTACATAAACTCGATGAACGAGAGGATCCGAAACCAATTTGCCAACTCGAACCCATTCGATTTTCGCCACATATCGCCATTGAAGAGTATCGAAAATTTCAAGGATGTGGGTCCGTCAGTGGTGATGGCAAGCCCCGGTGGGCTCCAGAGCGGGTTATCGAGACAACTGTTTGACAAATGGTGTGCCGACAAGAAGAACGCTTGTGTGATACCTGGATACGTTGTCGAAGGGACCTTAGCGAAAACTATCATTAACGAACCGAAAGAAGTTAGCCTCATGAATGGACTCACTGCCCCACTCAACATGCAGGTTCACTACATTTCCTTCTCTGCTCACGCAGATTACAATCAAACGAGCACGTTCTTGCAAGAGCTTATGCCCCCTAACATTATACTTGTTCACGGCGAAGCCAATGAGATGATGAGGCTGAAGCAAAAGCTCGTCTCGCTTTTTACCGACTCTAACACCAAGATTATTACCCCCAAGAACTGTCAGTCCGTCGAAATGTATTTCAACTCTGAAAAAATGGCAAAAACAATAGGAAAACTGGCTGAAAAGACACCCGAAGTTGGTGATACCGTTAATGGTCTACTTGTAAAGAAAGGGTTTTCGTATCAAATAATGGCACCCGATGACCTCCATATCTTTTCACAGCTATCAACAGGGAATGTTACACAAAGGATCACTATCCCTTATTCGGGTGCCTTTGGGGTGATAAAACACAGGCTGAAGCAGATATATGAGAGCGTAGAATCTTCAACAGACGAGGAATCAAACGTACAAACTTTACGGGTCCATGAACGGGTAACTGTGAAACATGAATCGGAGAACCATATCTCGTTGCATTGGACAGCGGACCCTGTTAGTGACATGGTGTCGGACTCGATTGTGGCTCTTGTTTTGAATGCGAGCAGGGAGATTCCTAAGGTGGTGGTGGAGTCCGAGCCGGTGGTTGATGAAGTGGAGGAGGAGAAGAAAGCTGAGAAAATCGTACATGCACTCCTCGTTTCTCTCTTTGGAGATGTAAAGCTCGGGGAGAATGGGAAGCTGGTGATCACAGTTGATGGGAATGCGGCGACTCTTGATAAACAAACCGGCGATGTTGAAGGAGAAAACGAAGGGCTTAAAGAGCGAGTGAGGACCGCGTTCAGGCGGATTCAAAATGCTGTGAAACCAATTCCTGTATCTGCATCTTATTAG

Network for GWHGAAZE018855

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00753.28	Lactamase_B	35	201	1.90E-22
PF10996.9	Beta-Casp	259	380	2.40E-27
PF07521.13	RMMBL	394	444	1.30E-16
PF11718.9	CPSF73-100_C	490	689	1.00E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14403	CPSF3, YSH1	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.975
	SRR3591706	second leaf	6.651
	SRR3591707	mature leaf	4.766
	SRR3591708	Shoot apex	18.427
	SRR3591709	Stem	7.839
	SRR3591710	White floral bud	9.079
	SRR3591711	White flower	11.780
	SRR3591712	Green floral bud	9.913
	SRR3591713	Yellow flower	7.975
SRP173429	SRR8316895	Juvenile bud stage	9.778
	SRR8316896	Juvenile bud stage	11.889
	SRR8316897	Juvenile bud stage	4.424
	SRR8316894	Third green stage	4.839
	SRR8316900	Third green stage	14.191
	SRR8316901	Third green stage	12.388
	SRR8316898	Complete white stage	2.347
	SRR8316899	Complete white stage	10.508
	SRR8316903	Complete white stage	4.810
	SRR8316902	Silver flowering stage	5.300
	SRR8316904	Silver flowering stage	6.487
	SRR8316905	Silver flowering stage	2.525
	SRR8316906	Gold flowering stage	9.950
	SRR8316907	Gold flowering stage	10.438
	SRR8316908	Gold flowering stage	7.492
SRP132670	SRR6706286	Control	13.553
	SRR6706287	Light intensity 50%	12.202
	SRR6706288	Light intensity 20%	12.443
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.784
	CNS0095593	Slightly white alabastrum(diploid) 2	12.040
	CNS0095594	Slightly white alabastrum(diploid) 3	9.868
	CNS0095595	Whole white alabastrum(diploid) 2	8.858
	CNS0095596	Whole white alabastrum(diploid) 3	6.527
	CNS0095597	Whole white alabastrum(diploid) 4	6.991
	CNS0095598	Silvery flower (diploied) 1	14.709
	CNS0095599	Silvery flower (diploied) 2	10.359
	CNS0095600	Silvery flower (diploied) 3	11.730
	CNS0095601	Golden flower (diploid) 1	11.012
	CNS0095602	Golden flower (diploid) 2	12.548
	CNS0095603	Golden flower (diploid) 3	11.779
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.629
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.281
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.246
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.428
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.051
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.712
	CNS0095610	Silvery flower (tetraploid) 1	8.398
	CNS0095611	Silvery flower (tetraploid) 2	11.710
	CNS0095612	Silvery flower (tetraploid) 3	11.648
	CNS0095613	Golden flower (tetraploid) 1	6.967
	CNS0095614	Golden flower (tetraploid) 2	7.796
	CNS0095615	Golden flower (tetraploid) 3	9.802
CRA001975	CRR073297	Stem 1	21.606
	CRR073298	Stem 2	19.564
	CRR073299	Stem 3	22.037
	CRR073300	Leaf 1	16.887
	CRR073301	Leaf 2	17.869
	CRR073302	Leaf 3	14.750
	CRR073303	Juvenile bud 1	16.246
	CRR073304	Juvenile bud 2	10.372
	CRR073305	Juvenile bud 3	21.490
	CRR073306	Third green 1	5.076
	CRR073307	Third green 2	4.055
	CRR073308	Third green 3	5.140
	CRR073309	Second white 1	9.665
	CRR073310	Second white 2	9.722
	CRR073311	Second white 3	11.804
	CRR073312	Silver flowering 1	8.385
	CRR073313	Silver flowering 2	9.481
	CRR073314	Silver flowering 3	7.529
	CRR073315	Gold flowering 1	12.334
	CRR073316	Gold flowering 2	18.795
	CRR073317	Gold flowering 3	13.800
	CRR073318	Tawny withering 1	12.146
	CRR073319	Tawny withering 2	9.272
	CRR073320	Tawny withering 3	13.819