Detail information of GWHGAAZE018852


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAAQ21119.13.28794E-58ferredoxin I [Trifolium pratense]
Swissprottr|P00226|FER_SAMNI9E-57Ferredoxin
trEMBLtr|Q7XA98|Q7XA98_TRIPR1E-58Ferredoxin I {ECO:0000313|EMBL:AAQ21119.1}
TAIR10AT1G60950.12E-302Fe-2S ferredoxin-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2549376125494057+
GWHAAZE00000005mRNA2549376125494057+
GWHAAZE00000005exon2549376125494057+
GWHAAZE00000005CDS2549376125494057+
Transcript Sequence

Network for GWHGAAZE018852

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00111.28Fer214832.90E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02639petF Photosynthesis map00195

Gene Ontology

GO term OntologyName
GO:0022900biological_processelectron transport chain
GO:0051537molecular_function2 iron, 2 sulfur cluster binding
GO:0009055molecular_functionelectron transfer activity
GO:0051536molecular_functioniron-sulfur cluster binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf860.348
SRR3591706second leaf6294.547
SRR3591707mature leaf4422.053
SRR3591708Shoot apex2122.068
SRR3591709Stem562.763
SRR3591710White floral bud267.171
SRR3591711White flower252.589
SRR3591712Green floral bud163.358
SRR3591713Yellow flower40.512
SRP173429 SRR8316895Juvenile bud stage 371.505
SRR8316896Juvenile bud stage 319.490
SRR8316897Juvenile bud stage 333.206
SRR8316894Third green stage 142.533
SRR8316900Third green stage 397.205
SRR8316901Third green stage 308.268
SRR8316898Complete white stage 170.617
SRR8316899Complete white stage 221.781
SRR8316903Complete white stage 306.317
SRR8316902Silver flowering stage139.219
SRR8316904Silver flowering stage135.213
SRR8316905Silver flowering stage91.237
SRR8316906Gold flowering stage 95.401
SRR8316907Gold flowering stage 82.990
SRR8316908Gold flowering stage 98.247
SRP132670SRR6706286Control573.629
SRR6706287Light intensity 50%503.244
SRR6706288Light intensity 20%493.962
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1367.771
CNS0095593Slightly white alabastrum(diploid) 2273.283
CNS0095594Slightly white alabastrum(diploid) 3245.715
CNS0095595Whole white alabastrum(diploid) 2283.789
CNS0095596Whole white alabastrum(diploid) 3298.847
CNS0095597Whole white alabastrum(diploid) 4185.283
CNS0095598Silvery flower (diploied) 1505.237
CNS0095599Silvery flower (diploied) 2573.637
CNS0095600Silvery flower (diploied) 3265.127
CNS0095601Golden flower (diploid) 1418.852
CNS0095602Golden flower (diploid) 2277.452
CNS0095603Golden flower (diploid) 3270.266
CNS0095604Slightly white alabastrum(tetraploid) 1313.362
CNS0095605Slightly white alabastrum(tetraploid) 2385.595
CNS0095606Slightly white alabastrum(tetraploid) 3390.537
CNS0095607Whole white alabastrum(tetraploid) 1171.569
CNS0095608Whole white alabastrum(tetraploid) 2226.757
CNS0095609Whole white alabastrum(tetraploid) 3271.870
CNS0095610Silvery flower (tetraploid) 1447.389
CNS0095611Silvery flower (tetraploid) 2634.046
CNS0095612Silvery flower (tetraploid) 3157.121
CNS0095613Golden flower (tetraploid) 1185.402
CNS0095614Golden flower (tetraploid) 2243.682
CNS0095615Golden flower (tetraploid) 346.718
CRA001975CRR073297Stem 1257.875
CRR073298Stem 2236.215
CRR073299Stem 3444.945
CRR073300Leaf 149.258
CRR073301Leaf 264.843
CRR073302Leaf 391.906
CRR073303Juvenile bud 1102.100
CRR073304Juvenile bud 2173.004
CRR073305Juvenile bud 3120.432
CRR073306Third green 1299.588
CRR073307Third green 2302.789
CRR073308Third green 3238.410
CRR073309Second white 194.260
CRR073310Second white 242.376
CRR073311Second white 325.283
CRR073312Silver flowering 126.617
CRR073313Silver flowering 235.625
CRR073314Silver flowering 324.586
CRR073315Gold flowering 13190.415
CRR073316Gold flowering 22431.666
CRR073317Gold flowering 33567.578
CRR073318Tawny withering 1172.753
CRR073319Tawny withering 2210.005
CRR073320Tawny withering 3170.083