Gene detail

Detail information of GWHGAAZE018849

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010658056.1	PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Vitis vinifera]
Swissprot	tr\|Q5M731\|TPS1L_ARATH	Hydroxymethylpyrimidine kinase (Precursor)
trEMBL	tr\|D7TGZ0\|D7TGZ0_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI29762.3}
TAIR10	AT1G22940.1	thiamin biosynthesis protein, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	25466194	25473989	+
GWHAAZE00000005	mRNA	25466194	25473989	+
GWHAAZE00000005	exon	25466194	25466253	+
GWHAAZE00000005	exon	25466399	25466635	+
GWHAAZE00000005	exon	25467026	25467100	+
GWHAAZE00000005	exon	25468542	25468617	+
GWHAAZE00000005	exon	25468701	25468776	+
GWHAAZE00000005	exon	25469350	25469484	+
GWHAAZE00000005	exon	25470531	25470577	+
GWHAAZE00000005	exon	25470711	25470838	+
GWHAAZE00000005	exon	25472411	25472667	+
GWHAAZE00000005	exon	25473458	25473989	+
GWHAAZE00000005	CDS	25466194	25466253	+
GWHAAZE00000005	CDS	25466399	25466635	+
GWHAAZE00000005	CDS	25467026	25467100	+
GWHAAZE00000005	CDS	25468542	25468617	+
GWHAAZE00000005	CDS	25468701	25468776	+
GWHAAZE00000005	CDS	25469350	25469484	+
GWHAAZE00000005	CDS	25470531	25470577	+
GWHAAZE00000005	CDS	25470711	25470838	+
GWHAAZE00000005	CDS	25472411	25472667	+
GWHAAZE00000005	CDS	25473458	25473989	+

Transcript Sequence
>GWHTAAZE018871 ATGGCTTACTTTTCCTATCAACTCCTATCCGGTAATCCCTTCTCCATCACCAACACCAAGATTTGTCCACCATCGAGACCTAGGGTTTTGACTATCAAGGCAATGCAAGAAGACAAGGCGTTGGCAGTGACTAACGGAAGCGCTAATTCGAGAATCCCGCATGTTCTTACCGTCGCCGGCTCCGATTCAGGTGCCGGCGCTGGGATTCAAGCTGACTTAAAGGCTTGTGCTGCACGTGGAGTTTACTGTTCCACTGTTATCACTGCTGTTACTGCGCAGAACACTGTTGGAGTTCAGGGTGTGAACATTGTGCCGGAAGATTTTGTTGCTGAGCAGTTGAAGTCTGTGCTCTCTGACATGCGCGTTGATGTTGTGAAAACAGGCATGCTCCCCTCAATTGGGATAGTCAAGATCCTTCATCAGAGCCTTAAGGAGTTCCCTGTTCAAGCTTTAGTTGTTGATCCTGTTATGGTATCTACAAGTGGAGATGTACTGGCTGGTCCTTCAGTTCTTGCTTCATTTAGGGAGGAACTTCTTCCCATTGCAGACATAGTAACCCCGAATCTAAAAGAGGCGTCTGCTTTACTTGGTGGCGTGCAATTGGACACAGTAGCTGACATGTGTTCCGCTGCAAAATCTATACATGCCATGGGCCCACGGAATGTACTTGTAAAAGGTGGTGATCTCCCTGCTTCATCGGATGCCTGGGAGGATTTTTATGAGCTACATTCACCACGTGTAAAAACTAGGAATACTCATGGAACAGGTTGCACTTTGGCATCATGTATAGCAGCTGAGCTAGCAAAAGGTTCCACAATGCTATCGGCTGTTAAGGTAGCCAAACACTATGTGGAGATTGCGTTGGATTATAGCAAAGACATTGTAATAGGAAATGGGATTCAAGGTCCTTTTGACCATCTACTTAAGCTTAAGAGCAACGTCCACAGTTCACCTAGGCAACATGTGTTTGACCCAAGCGATCTCTTCTTGTATGCTGTTACTGACTCGGGGATGAATAGAAAGTGGGGTCACTCAATAACAGATGCTGTGAAAGCTGCCATAGAGGGAGGTGCCACCATTGTTCAGCTGAGGGAGAAAGAAGCAGAAACACGAGACTTTCTAGAATCGGCCAAAGCATGCCTGGAAATTTGCCGCTCCCACAACATCCCTCTTCTGATAAACGACCGGATTGATATTGCCCTTGCTTGTGATGCCGATGGCGTGCACGTTGGCCAGTCGGACATGCCCATTTCTACAGCACGAGCCCTTCTCGGTCCAGATAAGATCATCGGGGTTTCGTGCAAGACGCCCGAGCATGCTCACAAGGCGTGGATTGACGGTGCTGATTACATTGGCTGTGGGGGCGTGTACCCAACCAATACTAAAGCAAATAATCGGACTGTCGGTTTGGACGGGCTTAAGACTGTGTGTTTGGCTTCAAAGTTACCGGTGGTTGCTATTGGAGGTATAGGTGTTTCAAATGCTCGGGCTGTGATGGAAATTGGTGCACCGAATTTGAAAGGTGTGGCGGTTGTCTCGGCCCTGTTTGACCGGGAATGTGTTTTAACGGAGACGATGAAGTTGAAGGGAACGCTAATGGAGGTTGCTAATATGGTGAAGTGA

Network for GWHGAAZE018849

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08543.13	Phos_pyr_kin	62	299	2.30E-83
PF02581.18	TMP-TENI	330	515	4.10E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14153	thiDE	Metabolic pathways	map01100
K14153	thiDE	Thiamine metabolism	map00730

Gene Ontology

GO term	Ontology	Name
GO:0009228	biological_process	thiamine biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0008972	molecular_function	phosphomethylpyrimidine kinase activity
GO:0004789	molecular_function	thiamine-phosphate diphosphorylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.482
	SRR3591706	second leaf	18.698
	SRR3591707	mature leaf	19.352
	SRR3591708	Shoot apex	16.540
	SRR3591709	Stem	16.796
	SRR3591710	White floral bud	12.584
	SRR3591711	White flower	15.146
	SRR3591712	Green floral bud	12.006
	SRR3591713	Yellow flower	17.541
SRP173429	SRR8316895	Juvenile bud stage	13.894
	SRR8316896	Juvenile bud stage	17.252
	SRR8316897	Juvenile bud stage	5.847
	SRR8316894	Third green stage	7.126
	SRR8316900	Third green stage	20.994
	SRR8316901	Third green stage	19.960
	SRR8316898	Complete white stage	8.401
	SRR8316899	Complete white stage	21.786
	SRR8316903	Complete white stage	13.925
	SRR8316902	Silver flowering stage	6.835
	SRR8316904	Silver flowering stage	8.172
	SRR8316905	Silver flowering stage	3.809
	SRR8316906	Gold flowering stage	17.670
	SRR8316907	Gold flowering stage	15.305
	SRR8316908	Gold flowering stage	13.935
SRP132670	SRR6706286	Control	21.649
	SRR6706287	Light intensity 50%	21.732
	SRR6706288	Light intensity 20%	25.581
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.002
	CNS0095593	Slightly white alabastrum(diploid) 2	12.161
	CNS0095594	Slightly white alabastrum(diploid) 3	12.142
	CNS0095595	Whole white alabastrum(diploid) 2	12.637
	CNS0095596	Whole white alabastrum(diploid) 3	10.819
	CNS0095597	Whole white alabastrum(diploid) 4	9.527
	CNS0095598	Silvery flower (diploied) 1	21.190
	CNS0095599	Silvery flower (diploied) 2	16.649
	CNS0095600	Silvery flower (diploied) 3	17.132
	CNS0095601	Golden flower (diploid) 1	15.385
	CNS0095602	Golden flower (diploid) 2	18.986
	CNS0095603	Golden flower (diploid) 3	17.713
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.410
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.573
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.306
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.129
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.848
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.703
	CNS0095610	Silvery flower (tetraploid) 1	8.644
	CNS0095611	Silvery flower (tetraploid) 2	9.263
	CNS0095612	Silvery flower (tetraploid) 3	7.628
	CNS0095613	Golden flower (tetraploid) 1	6.460
	CNS0095614	Golden flower (tetraploid) 2	6.811
	CNS0095615	Golden flower (tetraploid) 3	4.550
CRA001975	CRR073297	Stem 1	26.782
	CRR073298	Stem 2	24.104
	CRR073299	Stem 3	29.018
	CRR073300	Leaf 1	23.215
	CRR073301	Leaf 2	23.927
	CRR073302	Leaf 3	25.976
	CRR073303	Juvenile bud 1	23.474
	CRR073304	Juvenile bud 2	23.672
	CRR073305	Juvenile bud 3	25.194
	CRR073306	Third green 1	16.456
	CRR073307	Third green 2	10.887
	CRR073308	Third green 3	12.485
	CRR073309	Second white 1	20.304
	CRR073310	Second white 2	17.244
	CRR073311	Second white 3	17.668
	CRR073312	Silver flowering 1	13.977
	CRR073313	Silver flowering 2	20.178
	CRR073314	Silver flowering 3	13.967
	CRR073315	Gold flowering 1	34.539
	CRR073316	Gold flowering 2	54.040
	CRR073317	Gold flowering 3	40.719
	CRR073318	Tawny withering 1	22.959
	CRR073319	Tawny withering 2	17.797
	CRR073320	Tawny withering 3	25.493