Gene detail

Detail information of GWHGAAZE018780

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002268766.1	0	PREDICTED: aminotransferase ALD1 [Vitis vinifera]
Swissprot	tr\|Q9ZQI7\|ALD1_ARATH	0	Aminotransferase ALD1
trEMBL	tr\|A0A061E1D8\|A0A061E1D8_THECC	0	AGD2-like defense response protein 1 isoform 2 {ECO:0000313\|EMBL:EOX98854.1}
TAIR10	AT2G13810.1	2E-177	AGD2-like defense response protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	24190810	24197347	-
GWHAAZE00000005	mRNA	24190810	24197347	-
GWHAAZE00000005	exon	24197256	24197347	-
GWHAAZE00000005	exon	24197096	24197121	-
GWHAAZE00000005	exon	24196928	24197001	-
GWHAAZE00000005	exon	24196499	24196615	-
GWHAAZE00000005	exon	24194329	24194391	-
GWHAAZE00000005	exon	24194029	24194183	-
GWHAAZE00000005	exon	24193851	24193941	-
GWHAAZE00000005	exon	24192836	24193156	-
GWHAAZE00000005	exon	24191792	24191998	-
GWHAAZE00000005	exon	24190810	24191106	-
GWHAAZE00000005	five_prime_UTR	24197318	24197347	-
GWHAAZE00000005	CDS	24197256	24197317	-
GWHAAZE00000005	CDS	24197096	24197121	-
GWHAAZE00000005	CDS	24196928	24197001	-
GWHAAZE00000005	CDS	24196499	24196615	-
GWHAAZE00000005	CDS	24194329	24194391	-
GWHAAZE00000005	CDS	24194029	24194183	-
GWHAAZE00000005	CDS	24193851	24193941	-
GWHAAZE00000005	CDS	24192836	24193156	-
GWHAAZE00000005	CDS	24191792	24191998	-
GWHAAZE00000005	CDS	24190810	24191106	-

Transcript Sequence
>GWHTAAZE018802 AGAGCAAGAACTGTTAGCAAATTACAAAAGATGTACAAGATTCCGTCTTGCAGTTTCATGCCTCGTACACTTTTGCTGAAGCCTAGGGCCAGTTTGAAACTACCAAAAGAGGGAACCGTTGCTGCTCATTGTACAAAAGTAGACCGCAATGTAAACCTGGAGAAGTTGCAAAATAACTACCTGTTTCCGGAGATTTCTGCAAGGGAGCTTGAGCACATTAAGAAGTATCCAAATGCAAAAGTTATTAGCCTTGGGATTGGTGATACTACGGAGCCAATACCAGATATTGTAACTCTGAGAATGGCTGATTACGCACGCGCCCTTTCAACACGTGAAGGTTATAAAGGGTACGGTGCCGAGCAAGGGAACAAGGCATTACGGAAAGCAATTGCAGAAACATTCTACGGTGATATGGCAGTAAAAGGCAAAGAAGTTTTTGTATCTGATGGTTCACAGTGTGATATTTCTCGCCTTCAGGTATTTAAATATTTTAACATTGGTACTTACTTTCTTGTTGAATTAATTTTCTTAATTCATGGTTTCTGTTTTCTTTTTCTTTTTCTGCAGCTGCTTCTGGGTTCCAATGTGTCAATTGCTGTACAGGATCCAAACTTCCCGGCTTATATGGATTCAAGTGTTATAATCGGTCAGAGTGGTGATTTACAAGAGGAAACATTGAAGTATAAGAACATTGAGTACATGACATGTGGGCCTCAGAATAATTTCTTTCCAGACTTGTCAAACACTTCAAGAACAGACATACTATTCTTCTGCTCTCCCAATAATCCAACCGGGCATGCTGCATCAAGAGAGCAATTGGAACAGCTTGTGAGATTTGCAAGGGAGAATGGGTCAATAATTGTTTATGACTCTGCCTACGCTGCTTATATCACTGATGGAAGTCCAAGGTCCATATATGAAATTCCTGGTGCCAGAGAGGTTGCCATCGAAATATCATCCTTCTCCAAAATAGCAGGGTTCACAGGGGTTCGTCTTGGTTGGACCGTGGTACCAGAGGAGCTCTTATATGCAAATAAAGTTCCAGTCATAAATGACTTCAATCGCATTGTATGCACCTGCTTTAATGGTGCTTCCAGTATAGCTCAAGCTGGTGGTCTCGCATGTCTTTCCTCAGAAGGTTTTCAGGCCATGCTCTCCGTTGTTGACTACTACAAAGAGAACGCAACAATATTGCTCGACACCTTTGCTTCAATGGGTTTAAAGGCATATGGCGGTGTAAACGCACCATATGTGTGGGTACATTTTCCAGGTAGAAAATCTTGGGATGTATTTAATGAAATTCTTGAGAAGACGCATATAATTACAGTTCCAGGGAGTGGATTTGGACCAGGTGGTGAAGAGTATATAAGGGTCACTGCTTTTGGACATAGAGAGTGTATCCTTGAAGCCTCATCAAGGCTGAGAAGCAACCTTTGCCCATAA

Network for GWHGAAZE018780

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	71	450	6.00E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10206	E2.6.1.83	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Lysine biosynthesis	map00300

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0008483	molecular_function	transaminase activity
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.035
	SRR3591706	second leaf	1.123
	SRR3591707	mature leaf	0.517
	SRR3591708	Shoot apex	3.130
	SRR3591709	Stem	4.813
	SRR3591710	White floral bud	0.804
	SRR3591711	White flower	0.670
	SRR3591712	Green floral bud	0.702
	SRR3591713	Yellow flower	0.541
SRP173429	SRR8316895	Juvenile bud stage	2.173
	SRR8316896	Juvenile bud stage	2.676
	SRR8316897	Juvenile bud stage	1.579
	SRR8316894	Third green stage	0.559
	SRR8316900	Third green stage	0.856
	SRR8316901	Third green stage	1.789
	SRR8316898	Complete white stage	0.279
	SRR8316899	Complete white stage	0.606
	SRR8316903	Complete white stage	0.189
	SRR8316902	Silver flowering stage	0.100
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.422
	SRR8316906	Gold flowering stage	0.468
	SRR8316907	Gold flowering stage	0.327
	SRR8316908	Gold flowering stage	0.688
SRP132670	SRR6706286	Control	1.367
	SRR6706287	Light intensity 50%	0.720
	SRR6706288	Light intensity 20%	0.763
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.088
	CNS0095593	Slightly white alabastrum(diploid) 2	1.894
	CNS0095594	Slightly white alabastrum(diploid) 3	1.887
	CNS0095595	Whole white alabastrum(diploid) 2	0.489
	CNS0095596	Whole white alabastrum(diploid) 3	1.011
	CNS0095597	Whole white alabastrum(diploid) 4	0.833
	CNS0095598	Silvery flower (diploied) 1	0.447
	CNS0095599	Silvery flower (diploied) 2	0.749
	CNS0095600	Silvery flower (diploied) 3	0.081
	CNS0095601	Golden flower (diploid) 1	0.039
	CNS0095602	Golden flower (diploid) 2	0.255
	CNS0095603	Golden flower (diploid) 3	0.257
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.938
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.212
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.387
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.324
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.019
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.010
	CNS0095610	Silvery flower (tetraploid) 1	0.020
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.129
	CNS0095613	Golden flower (tetraploid) 1	0.274
	CNS0095614	Golden flower (tetraploid) 2	0.188
	CNS0095615	Golden flower (tetraploid) 3	0.376
CRA001975	CRR073297	Stem 1	1.112
	CRR073298	Stem 2	1.288
	CRR073299	Stem 3	0.464
	CRR073300	Leaf 1	0.887
	CRR073301	Leaf 2	1.071
	CRR073302	Leaf 3	0.308
	CRR073303	Juvenile bud 1	0.006
	CRR073304	Juvenile bud 2	0.150
	CRR073305	Juvenile bud 3	0.183
	CRR073306	Third green 1	0.177
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.193
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.257
	CRR073317	Gold flowering 3	0.090
	CRR073318	Tawny withering 1	3.232
	CRR073319	Tawny withering 2	6.191
	CRR073320	Tawny withering 3	1.333