Gene detail

Detail information of GWHGAAZE018734

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011092701.1	PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like [Sesamum indicum]
Swissprot	tr\|Q00218\|AROG_ARATH	Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic (Precursor)
trEMBL	tr\|A0A022RFG9\|A0A022RFG9_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU39127.1}
TAIR10	AT4G33510.1	3-deoxy-d-arabino-heptulosonate 7-phosphate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	23543418	23548534	+
GWHAAZE00000005	mRNA	23543418	23548534	+
GWHAAZE00000005	exon	23543418	23543537	+
GWHAAZE00000005	exon	23543630	23543902	+
GWHAAZE00000005	exon	23545479	23545756	+
GWHAAZE00000005	exon	23546081	23546357	+
GWHAAZE00000005	exon	23546979	23547224	+
GWHAAZE00000005	exon	23548268	23548534	+
GWHAAZE00000005	CDS	23543418	23543537	+
GWHAAZE00000005	CDS	23543630	23543902	+
GWHAAZE00000005	CDS	23545479	23545756	+
GWHAAZE00000005	CDS	23546081	23546357	+
GWHAAZE00000005	CDS	23546979	23547224	+
GWHAAZE00000005	CDS	23548268	23548534	+

Transcript Sequence
>GWHTAAZE018756 ATGTCCCTGACAACCAACACCTCCCCCTCTCTCCTCAAACCCCACCACCACCATCTCTACACGCCCCACTTCCTCTCTCCCACCTTCACCACCAAATCAACAATACCCCGCATCTCCGCCGCGTCGCAATTGCCGGATTACCCAGCAAAGGATGCTCTCGAAGATGTGCTCAAGAAGCTGGAAACTTACCCTCCGATTGTATTTGCCGGAGAGGCGAGGGGATTGGAGGAGAGATTGGGGCAGGCTGCCATGGGGAATGCGTTTCTACTGCAGGGAGGGGATTGTGCGGAGAGTTTCAAGGAGTTTAATGCTAATAATATAAGGGATACTTTTAGGGTTCTTCTTCAGATGGGTGTTGTTCTTATGTTTGGTGGCCAAATGCCTGTCATCAAGGTGGGAAGAATGGCGGGTCAATTTGCAAAGCCAAGATCGGACCCATTTGAGGAAAAGGATGGGGTGAAGCTACCAAGTTACAGAGGTGACAATGTGAACGGGGATACATTTGATGAGAAATCAAGAATGCCAGACCCCGATAGGATGATTAGGGCTTACACCCAATCTGTTGCAACACTGAACCTCCTAAGGGCATTTGCTACTGGAGGCTATGCTGCAATGCAGAGAGTTAGCCAGTGGAATCTTGATTTCACTGAGCACAGTGAGCAGGGGGATAGGTACCGCGAACTGGCTAACCGAGTTGATGAGGCCATAGGTTTCATGGCTGCTGCCGGACTCACAGTGGGTCACCCGGTCATGACTACTACAGAGTTCTGGACTTCGCACGAGTGTTTGCTATTGCCTTACGAGCAGGCACTTACAAGGGAGGATTCAACTTCTGGTCTTTACTATGACTGTTCTGCTCACATGCTTTGGGTCGGTGAACGCACGAGGCAACTAGATGGTGCTCATGTTGAGTTCCTAAGAGGAATTTCCAACCCCCTTGGCATTAAGGTGAGCGATAAGATGGATCCAGAGGAGCTAGTAAGGCTCATTGATATTTTGAATCCTGAGAACAAGGCGGGAAGAATAACGATAATTACAAGAATGGGAGCTGAGAACATGAGAGTGAAGCTTCCCCATCTCATAAGGGCAGTTCGCAGAGCAGGTCAAATTGTCACTTGGGTCAGTGACCCCATGCACGGTAACACCATCAAAGCTCCTTGTGGACTAAAAACCCGTTCCTTTGACTCCATCAGGGCTGAGGTGAGAGCATTCTTCGATGTGCACGATCAAGAAGGAAGCTACCCGGGAGGGGTCCATCTAGAGATGACGGGCCAAAACGTGACTGAATGTGTAGGAGGTTCGCGTACTATTACTTACAACGACCTTAGCTCTCGCTATCACACTCACTGTGACCCCAGGCTCAATGCTTCTCAATCTCTCGAGCTAGCCTTCATTATTGCAGAGCGACTTAGGAAGCGAAGGCTTGGAGCGCAGCACTCTGTTGGCTCTTTGAGGCTCTAG

Network for GWHGAAZE018734

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01474.17	DAHP_synth_2	39	467	6.30E-193

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01626	E2.5.1.54, aroF, aroG, aroH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0009073	biological_process	aromatic amino acid family biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0003849	molecular_function	3-deoxy-7-phosphoheptulonate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	73.243
	SRR3591706	second leaf	80.599
	SRR3591707	mature leaf	157.764
	SRR3591708	Shoot apex	33.173
	SRR3591709	Stem	100.429
	SRR3591710	White floral bud	167.511
	SRR3591711	White flower	212.754
	SRR3591712	Green floral bud	106.847
	SRR3591713	Yellow flower	178.203
SRP173429	SRR8316895	Juvenile bud stage	60.099
	SRR8316896	Juvenile bud stage	86.778
	SRR8316897	Juvenile bud stage	36.089
	SRR8316894	Third green stage	34.952
	SRR8316900	Third green stage	137.039
	SRR8316901	Third green stage	122.722
	SRR8316898	Complete white stage	75.247
	SRR8316899	Complete white stage	158.032
	SRR8316903	Complete white stage	107.074
	SRR8316902	Silver flowering stage	101.354
	SRR8316904	Silver flowering stage	133.855
	SRR8316905	Silver flowering stage	87.343
	SRR8316906	Gold flowering stage	238.277
	SRR8316907	Gold flowering stage	254.960
	SRR8316908	Gold flowering stage	259.727
SRP132670	SRR6706286	Control	203.331
	SRR6706287	Light intensity 50%	210.703
	SRR6706288	Light intensity 20%	216.125
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	56.243
	CNS0095593	Slightly white alabastrum(diploid) 2	58.588
	CNS0095594	Slightly white alabastrum(diploid) 3	60.159
	CNS0095595	Whole white alabastrum(diploid) 2	59.821
	CNS0095596	Whole white alabastrum(diploid) 3	61.688
	CNS0095597	Whole white alabastrum(diploid) 4	59.270
	CNS0095598	Silvery flower (diploied) 1	100.372
	CNS0095599	Silvery flower (diploied) 2	102.328
	CNS0095600	Silvery flower (diploied) 3	262.597
	CNS0095601	Golden flower (diploid) 1	89.392
	CNS0095602	Golden flower (diploid) 2	221.717
	CNS0095603	Golden flower (diploid) 3	219.736
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.803
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.458
	CNS0095606	Slightly white alabastrum(tetraploid) 3	50.413
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.784
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.294
	CNS0095609	Whole white alabastrum(tetraploid) 3	68.128
	CNS0095610	Silvery flower (tetraploid) 1	126.982
	CNS0095611	Silvery flower (tetraploid) 2	126.495
	CNS0095612	Silvery flower (tetraploid) 3	137.005
	CNS0095613	Golden flower (tetraploid) 1	108.759
	CNS0095614	Golden flower (tetraploid) 2	120.426
	CNS0095615	Golden flower (tetraploid) 3	162.102
CRA001975	CRR073297	Stem 1	97.724
	CRR073298	Stem 2	102.723
	CRR073299	Stem 3	119.574
	CRR073300	Leaf 1	134.815
	CRR073301	Leaf 2	135.110
	CRR073302	Leaf 3	130.809
	CRR073303	Juvenile bud 1	152.887
	CRR073304	Juvenile bud 2	157.202
	CRR073305	Juvenile bud 3	192.462
	CRR073306	Third green 1	213.097
	CRR073307	Third green 2	162.655
	CRR073308	Third green 3	184.794
	CRR073309	Second white 1	254.069
	CRR073310	Second white 2	163.542
	CRR073311	Second white 3	178.217
	CRR073312	Silver flowering 1	177.764
	CRR073313	Silver flowering 2	180.798
	CRR073314	Silver flowering 3	167.814
	CRR073315	Gold flowering 1	115.142
	CRR073316	Gold flowering 2	152.893
	CRR073317	Gold flowering 3	137.467
	CRR073318	Tawny withering 1	75.476
	CRR073319	Tawny withering 2	57.601
	CRR073320	Tawny withering 3	74.231