Detail information of GWHGAAZE018725


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002267374.10PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like [Vitis vinifera]
Swissprottr|P47924|RIBA1_ARATH0GTP cyclohydrolase-2 (Precursor)
trEMBLtr|F6HTH9|F6HTH9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB57989.1}
TAIR10AT5G64300.10GTP cyclohydrolase II

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2339176023397465-
GWHAAZE00000005mRNA2339176023397465-
GWHAAZE00000005exon2339176023392017-
GWHAAZE00000005exon2339294323393239-
GWHAAZE00000005exon2339374923393878-
GWHAAZE00000005exon2339446623394788-
GWHAAZE00000005exon2339553723395758-
GWHAAZE00000005exon2339610323396433-
GWHAAZE00000005exon2339741623397465-
GWHAAZE00000005CDS2339741623397465-
GWHAAZE00000005CDS2339610323396433-
GWHAAZE00000005CDS2339553723395758-
GWHAAZE00000005CDS2339446623394788-
GWHAAZE00000005CDS2339374923393878-
GWHAAZE00000005CDS2339294323393239-
GWHAAZE00000005CDS2339176023392017-
Transcript Sequence

Network for GWHGAAZE018725

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00926.20DHBP_synthase1183102.70E-85
PF00925.21GTP_cyclohydro23224866.20E-71
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14652ribBA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Riboflavin metabolismmap00740
Folate biosynthesismap00790

Gene Ontology

GO term OntologyName
GO:0009231biological_processriboflavin biosynthetic process
GO:0008686molecular_function3,4-dihydroxy-2-butanone-4-phosphate synthase activity
GO:0003935molecular_functionGTP cyclohydrolase II activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf92.305
SRR3591706second leaf33.136
SRR3591707mature leaf29.578
SRR3591708Shoot apex34.297
SRR3591709Stem75.615
SRR3591710White floral bud59.172
SRR3591711White flower93.497
SRR3591712Green floral bud31.631
SRR3591713Yellow flower292.785
SRP173429 SRR8316895Juvenile bud stage 53.525
SRR8316896Juvenile bud stage 57.808
SRR8316897Juvenile bud stage 68.303
SRR8316894Third green stage 12.458
SRR8316900Third green stage 38.226
SRR8316901Third green stage 54.190
SRR8316898Complete white stage 32.310
SRR8316899Complete white stage 65.814
SRR8316903Complete white stage 41.229
SRR8316902Silver flowering stage67.329
SRR8316904Silver flowering stage69.351
SRR8316905Silver flowering stage43.267
SRR8316906Gold flowering stage 233.870
SRR8316907Gold flowering stage 202.231
SRR8316908Gold flowering stage 265.725
SRP132670SRR6706286Control64.824
SRR6706287Light intensity 50%69.452
SRR6706288Light intensity 20%61.553
CNP0000432CNS0095592Slightly white alabastrum(diploid) 140.641
CNS0095593Slightly white alabastrum(diploid) 242.954
CNS0095594Slightly white alabastrum(diploid) 343.337
CNS0095595Whole white alabastrum(diploid) 239.054
CNS0095596Whole white alabastrum(diploid) 324.635
CNS0095597Whole white alabastrum(diploid) 426.677
CNS0095598Silvery flower (diploied) 157.861
CNS0095599Silvery flower (diploied) 2106.915
CNS0095600Silvery flower (diploied) 3126.122
CNS0095601Golden flower (diploid) 1175.687
CNS0095602Golden flower (diploid) 2253.089
CNS0095603Golden flower (diploid) 3249.755
CNS0095604Slightly white alabastrum(tetraploid) 123.958
CNS0095605Slightly white alabastrum(tetraploid) 218.071
CNS0095606Slightly white alabastrum(tetraploid) 335.199
CNS0095607Whole white alabastrum(tetraploid) 120.292
CNS0095608Whole white alabastrum(tetraploid) 219.576
CNS0095609Whole white alabastrum(tetraploid) 344.977
CNS0095610Silvery flower (tetraploid) 1118.153
CNS0095611Silvery flower (tetraploid) 282.711
CNS0095612Silvery flower (tetraploid) 386.781
CNS0095613Golden flower (tetraploid) 1193.477
CNS0095614Golden flower (tetraploid) 2167.627
CNS0095615Golden flower (tetraploid) 3261.721
CRA001975CRR073297Stem 136.144
CRR073298Stem 233.103
CRR073299Stem 330.848
CRR073300Leaf 136.986
CRR073301Leaf 245.652
CRR073302Leaf 338.100
CRR073303Juvenile bud 145.426
CRR073304Juvenile bud 260.981
CRR073305Juvenile bud 350.253
CRR073306Third green 1133.220
CRR073307Third green 298.265
CRR073308Third green 3111.317
CRR073309Second white 1120.328
CRR073310Second white 2151.342
CRR073311Second white 3164.573
CRR073312Silver flowering 1289.485
CRR073313Silver flowering 2253.639
CRR073314Silver flowering 3274.261
CRR073315Gold flowering 140.979
CRR073316Gold flowering 255.844
CRR073317Gold flowering 335.415
CRR073318Tawny withering 134.371
CRR073319Tawny withering 276.129
CRR073320Tawny withering 355.207